h3n2_tree
Phylogenetic tree of H3N2's HA protein
Bundled with sitePath · exported, loads via data()
Class
phylo
Elements
5
Missing
0
Format
rda · none
version 3 · 89 KB
File
data/h3n2_tree.rda
Fingerprint
96dabfcd
Format documented
Yes
Source
Source not stated
About this object
A phylogenetic tree. Topology is in an edge matrix of parent-child pairs, with branch lengths, tip labels, and an edge-ordering attribute. R object catalogue
Structure
Distinct
5
Element length
1 – 7,554
Total length
13,223
Elements
Element
Type
Distinct
Missing
Summary
edgeinteger3,77801 – 3778·3,777 × 2 matrixmean 2362
Min.
1
1st Qu.
1889.25
Median
2519.5
Mean
2361.87
3rd Qu.
3149
Max.
3778
Std. dev
983.232
Skewness
-0.6653
Kurtosis
-0.4339
edge.lengthnumeric2,46001.0e-6 – 0.1608mean 0.0061
Min.
1.0e-6
1st Qu.
1.0e-6
Median
0.0032
Mean
0.0061
3rd Qu.
0.0064
Max.
0.1608
Std. dev
0.0125
Skewness
5.548
Kurtosis
41.16
Outliers
3060 low · 306 high
Nnode
integer
1
0
1888
tip.label
character
1,890
0
8 characters
root.edge
numeric
1
0
0
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| order | character | 1 | cladewise |
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.22 | 2025-10-29 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.21 | 2025-09-18 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.20 | 2024-10-29 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.19 | 2024-04-30 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.18 | 2023-10-24 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.17 | 2023-04-25 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.16 | 2022-11-01 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.15 | 2022-04-26 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.14 | 2022-01-26 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.13 | 2021-09-16 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.12 | 2021-04-27 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.11 | 2020-06-11 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.10 | 2020-04-01 | 5 elements | Unchanged | rda · none version 3 · 89 KB | exact |
| 3.9 | 2019-06-25 | 5 elements | – | rda · none version 3 · 89 KB | exact |