cnts
Bundled with ribosomeProfilingQC · provided in inst/extdata, read by path with system.file()
Class
list
Elements
3
Missing
0
Format
rds · xz
version 3 · 31 KB
File
inst/extdata/cnts.rds
Fingerprint
82de6e37
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
3
Nesting depth
2
Element length
6 – 1,996
Total length
3,998
Nested rows
499
Nested columns
6
Elements
Element
Type
Distinct
Missing
Summary
RPFsnumeric22100 – 60715·499 × 4 matrixmean 108.9
Min.
0
1st Qu.
0
Median
4
Mean
108.882
3rd Qu.
20
Max.
60715
Std. dev
1691.23
Skewness
28.87
Kurtosis
924.6
Zeros
520
Outliers
2620 low · 262 high
mRNAinteger13800 – 522·499 × 4 matrixmean 13.1
Min.
0
1st Qu.
0
Median
1
Mean
13.0997
3rd Qu.
11
Max.
522
Std. dev
32.9521
Skewness
5.635
Kurtosis
49.86
Zeros
922
Outliers
2540 low · 254 high
annotationlist60nested·499 rows nested
Element length
499 – 499
Total length
2,994
Nested rows
499
What is inside it
Element
Type
Distinct
Missing
Summary
GeneID
character
499
0
18 characters
Chr
character
47
0
4 – 389 characters
Start
character
499
0
6 – 701 characters
End
character
499
0
6 – 701 characters
Strand
character
75
0
1 – 155 characters
Lengthinteger4650150 – 13112mean 2652
Min.
150
1st Qu.
1283.5
Median
2027
Mean
2652.19
3rd Qu.
3363
Max.
13112
Std. dev
2031.42
Skewness
2.003
Kurtosis
5.364
Outliers
280 low · 28 high
Every nested table has these 6 columns
- GeneID
- Chr
- Start
- End
- Strand
- Length
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.22 | 2025-10-29 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.21 | 2025-04-15 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.20 | 2024-10-29 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.19 | 2024-04-30 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.18 | 2024-03-15 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.17 | 2023-04-25 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.16 | 2022-11-01 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.15 | 2022-04-26 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.14 | 2021-11-10 | 3 elements | Unchanged | rds · xz version 3 · 31 KB | exact |
| 3.13 | 2021-05-19 | 3 elements | Data changed Class, Type, Missing and Distinct unchanged | rds · xz version 3 · 31 KB | exact |
| 3.12 | 2021-03-10 | 3 elements | Unchanged | rds · xz version 3 · 77 KB | exact |
| 3.11 | 2020-08-05 | 3 elements | – | rds · xz version 3 · 77 KB | exact |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Type is what the values in it are. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object.