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exampleE

The example data of the mean gene expression levels

Bundled with puma · exported, loads via data()

Class
matrix
Dimensions
200 × 6
Missing
0
Format
rda · gzip
version 2 · 9.7 KB
File
data/exampleE.rda
Fingerprint
91f0560e
Format documented
Yes
Source
Choe,S.E., Boutros,M., Michelson,A.M., Church,G.M., Halfon,M.S.: Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biology, 6 (2005) R16.
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
1,200
Missing
0
Min.
-2.44112
1st Qu.
8.44576
Median
10.3021
Mean
9.33554
3rd Qu.
11.3439
Max.
13.2286
Std. dev
2.99788
Distinct
1,200
Skewness
-1.483
Kurtosis
1.749
Outliers
102 102 low · 0 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows-1.58898.446610.3319.335511.30812.7472.9616
Columns8.85079.15059.28169.33559.58119.81160.35473

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
Rows141206_at, 141209_at, 141210_at, 141211_at, 141212_at, 141213_at, 141215_at, 141217_at, 141220_at, 141223_at, 141227_at, 141230_at, …200
ColumnsC1.CEL, C2.CEL, C3.CEL, S1.CEL, S2.CEL, S3.CEL6
Columns

This object is 6 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

32 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 6 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.222025-10-29200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.212025-04-15200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.202024-10-29200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.192024-04-30200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.182023-10-24200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.172023-04-25200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.162022-11-01200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.152022-04-26200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.142021-10-26200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.132021-05-19200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.122020-10-27200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.112020-04-27200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.102019-10-29200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.92019-05-02200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.82018-10-30200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
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3.72018-04-30200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
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3.62017-10-30200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.52017-04-24200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.42016-10-17200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.32016-05-03200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.22015-10-13200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.12015-07-29200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
3.02014-10-13200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.142014-04-11200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.132013-10-14200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.122013-06-04200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.112012-10-01200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.102012-03-30200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.92011-10-31200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.82011-04-14200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.72010-10-18200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.62010-04-23200 × 6Unchangedrda · gzip
version 2 · 9.7 KB
exact
2.52009-10-27200 × 6Repackagedrda · gzip
version 2 · 9.7 KB
exact
2.42009-06-05200 × 6Unchangedrda · none
version 2 · 13 KB
exact
2.32009-01-27200 × 6Unchangedrda · none
version 2 · 13 KB
exact
2.22008-04-30200 × 6Unchangedrda · none
version 2 · 13 KB
exact
2.12007-11-08200 × 6Unchangedrda · none
version 2 · 13 KB
exact
2.02007-08-27200 × 6–rda · none
version 2 · 13 KB
exact

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