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Clust.exampleStd

The example data of the standard deviation for gene expression levels

Bundled with puma · exported, loads via data()

Class
matrix
Dimensions
700 × 20
Missing
0
Format
rda · xz
version 2 · 37 KB
File
data/Clust.exampleStd.RData
Fingerprint
35d60975
Format documented
Yes
Source
Liu, X. Lin, K., Andersen, B. Rattray, M. (2007) Including probe-level uncertainty in model-based gene expression clustering, BMC Bioinformatics, 8(98).
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
14,000
Missing
0
Min.
0.043982
1st Qu.
0.57461
Median
1.4099
Mean
1.69979
3rd Qu.
2.4295
Max.
6.3582
Std. dev
1.34421
Distinct
5,107
Skewness
0.8785
Kurtosis
0.06095
Outliers
122 0 low · 122 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows0.351961.4341.65221.69981.98123.53550.57853
Columns1.14211.35011.67411.69982.03752.35290.40364

The row means and the column means vary by a similar amount, so neither margin carries the structure on its own.

Dimensions and labels
MarginLabelsCount
Rowsprobeset1, probeset2, probeset3, probeset4, probeset5, probeset6, probeset7, probeset8, probeset9, probeset10, probeset11, probeset12, …700
ColumnsCHIP1, CHIP2, CHIP3, CHIP4, CHIP5, CHIP6, CHIP7, CHIP8, CHIP9, CHIP10, CHIP11, CHIP12, …20
Columns

This object is 20 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

15 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 20 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.222025-10-29700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.212025-04-15700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.202024-10-29700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.192024-04-30700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.182023-10-24700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.172023-04-25700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.162022-11-01700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.152022-04-26700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.142021-10-26700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.132021-05-19700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.122020-10-27700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.112020-04-27700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.102019-10-29700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.92019-05-02700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.82018-10-30700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.72018-04-30700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.62017-10-30700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.52017-04-24700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.42016-10-17700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.32016-05-03700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.22015-10-13700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.12015-07-29700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
3.02014-10-13700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
2.142014-04-11700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
2.132013-10-14700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
2.122013-06-04700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
2.112012-10-01700 × 20Unchangedrda · xz
version 2 · 37 KB
exact
2.102012-03-30700 × 20Repackagedrda · xz
version 2 · 37 KB
exact
2.92011-10-31700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.82011-04-14700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.72010-10-18700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.62010-04-23700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.52009-10-27700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.42009-06-05700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.32009-01-27700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.22008-04-30700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.12007-11-08700 × 20Unchangedrda · gzip
version 2 · 50 KB
exact
2.02007-08-27700 × 20–rda · gzip
version 2 · 50 KB
exact

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