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metaboliteData

A incomplete metabolite data set from an Arabidopsis coldstress experiment

Bundled with pcaMethods · exported, loads via data()

Class
matrix
Dimensions
154 × 52
Missing
419
Format
rda · gzip
version 2 · 26 KB
File
data/metaboliteData.RData
Fingerprint
862c8e4f
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
8,008
Missing
419
Min.
-1.4524
1st Qu.
-0.0165
Median
0.0886
Mean
0.218475
3rd Qu.
0.3149
Max.
2.7913
Std. dev
0.433886
Distinct
5,221
Skewness
1.791
Kurtosis
4.561
Zeros
1 0.013%
Outliers
796 54 low · 742 high
Longest missing run
2
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows-0.259980.0247890.104840.221020.348221.35440.30872
Columns-0.0509790.0815160.246810.219120.314830.510040.15443

The row means and the column means vary by a similar amount, so neither margin carries the structure on its own.

Dimensions and labels
MarginLabelsCount
RowsXylose methoxyamine (4TMS), Tyramine (3TMS), trans-Sinapinic acid (2TMS), Threonic acid-1,4-lactone (2TMS), trans-, Threonic acid (4TMS), Succinic acid (2TMS), Shikimic acid (4TMS), Salicylic acid (2TMS), Ribose methoxyamine (4TMS), Pyroglutamic acid (2TMS), Putrescine (4TMS), Phosphoric acid (3TMS), …154
ColumnsX0h, X0h.1, X0h.2, X0h.3, X0h.4, X0h.5, X0h.6, X1h, X1h.1, X1h.2, X1h.3, X1h.4, …52
Columns

This object is 52 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

2 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 52 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.222025-10-29154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.212025-04-15154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.202024-10-29154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.192024-04-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.182023-10-24154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.172023-04-25154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.162022-11-01154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.152022-04-26154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.142021-10-26154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.132021-05-19154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.122020-10-27154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.112020-04-27154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.102019-10-29154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.92019-05-02154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.82018-10-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.72018-04-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.62017-10-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.52017-04-24154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.42016-10-17154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.32016-05-03154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.22015-10-13154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.12015-04-16154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
3.02014-10-13154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.142014-04-11154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.132014-02-04154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.122013-04-03154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.112012-10-01154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.102012-03-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.92011-10-31154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.82011-04-13154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.72010-10-18154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.62010-04-22154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.52009-10-27154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.42009-04-20154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.32008-10-21154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.22008-04-30154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.12007-10-03154 × 52Unchangedrda · gzip
version 2 · 26 KB
exact
2.02007-04-24154 × 52Data changed
Dimensions 40 × 80 → 154 × 52 · Missing 311 → 419 · Distinct 2,479 → 5,221 · Value summary
rda · gzip
version 2 · 26 KB
exact
1.92007-04-1940 × 80–rda · gzip
version 2 · 11 KB
exact

Dimensions is the row and column count. Missing is how many values were recorded as absent. Distinct is how many different values were counted in the object. Value summary is the six-number summary of the values and their spread.

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