primer.df
Data Sets.
Bundled with openPrimeR · exported, loads via data()
Class
Primers
Elements
151
Missing
0
Format
rda · xz
version 2 · 12 KB
File
data/Ippolito.rda
Fingerprint
fe69bd9c
Format documented
Yes
Source
Source not stated
Structure
Distinct
65
Element length
8 – 8
Total length
1,208
Elements
Element
Type
Distinct
Missing
Summary
Identifierfactor801fw12fw13fw14fw15fw16fw1+2 more
1fw12fw13fw14fw15fw16fw1+2 more
Levels
8
Used
8
Rows per level
1fw12fw13fw14fw15fw16fw17fw18fw1
IDfactor80Ippolito2012|VH1|1_fw1Ippolito2012|VH157|2_fw1Ippolito2012|VH2|3_fw1Ippolito2012|VH3|4_fw1Ippolito2012|VH4|5_fw1Ippolito2012|VH4-DP63|6_fw1+2 more
Ippolito2012|VH1|1_fw1Ippolito2012|VH157|2_fw1Ippolito2012|VH2|3_fw1Ippolito2012|VH3|4_fw1Ippolito2012|VH4|5_fw1Ippolito2012|VH4-DP63|6_fw1+2 more
Levels
8
Used
8
Rows per level
Ippolito2012|VH1|1_fw1Ippolito2012|VH157|2_fw1Ippolito2012|VH2|3_fw1Ippolito2012|VH3|4_fw1Ippolito2012|VH4|5_fw1Ippolito2012|VH4-DP63|6_fw1Ippolito2012|VH6|7_fw1Ippolito2012|VH3N|8_fw1
Forward
character
8
0
21 – 23 characters
Reverse
character
1
0
0 characters·8 blank
primer_length_fwinteger3021 – 23mean 22
Min.
21
1st Qu.
21.75
Median
22
Mean
22
3rd Qu.
22.25
Max.
23
Std. dev
0.7559
Skewness
1.221e-14
Kurtosis
-1.469
primer_length_rev
integer
1
0
0
Direction
character
1
0
2 characters
Degeneracy_fwnumeric401 – 8mean 2.875
Min.
1
1st Qu.
1
Median
2
Mean
2.875
3rd Qu.
4
Max.
8
Std. dev
2.4165
Skewness
1.031
Kurtosis
-0.3189
Degeneracy_rev
numeric
1
0
1
Run
character
1
0
12 characters
DeltaH_fwnumeric80-184923 – -165442mean -1.741e+5
Min.
-184923
1st Qu.
-179453
Median
-172935
Mean
-174058
3rd Qu.
-168189
Max.
-165442
Std. dev
7471.34
Skewness
-0.2186
Kurtosis
-1.783
DeltaS_fwnumeric80-491.329 – -442.177mean -465.2
Min.
-491.329
1st Qu.
-476.294
Median
-464.406
Mean
-465.18
3rd Qu.
-453.241
Max.
-442.177
Std. dev
18.1198
Skewness
-0.0933
Kurtosis
-1.623
Tm_C_fwnumeric8055.11 – 65.31mean 61.35
Min.
55.11
1st Qu.
58.3725
Median
62.67
Mean
61.3488
3rd Qu.
64.63
Max.
65.31
Std. dev
3.9857
Skewness
-0.4403
Kurtosis
-1.683
Tm_K_fwnumeric80328.26 – 338.46mean 334.5
Min.
328.26
1st Qu.
331.522
Median
335.82
Mean
334.499
3rd Qu.
337.78
Max.
338.46
Std. dev
3.9857
Skewness
-0.4403
Kurtosis
-1.683
DeltaH_revlogical080 true·0 false
Longest missing run
8
Leading
8
Trailing
8
DeltaS_revlogical080 true·0 false
Longest missing run
8
Leading
8
Trailing
8
Tm_C_revlogical080 true·0 false
Longest missing run
8
Leading
8
Trailing
8
Tm_K_revlogical080 true·0 false
Longest missing run
8
Leading
8
Trailing
8
melting_tempnumeric8055.11 – 65.31mean 61.35
Min.
55.11
1st Qu.
58.3725
Median
62.67
Mean
61.3488
3rd Qu.
64.63
Max.
65.31
Std. dev
3.9857
Skewness
-0.4403
Kurtosis
-1.683
melting_temp_diffnumeric706.3 – 10.2mean 8.751
Min.
6.3
1st Qu.
7.565
Median
9.11
Mean
8.7513
3rd Qu.
10.0275
Max.
10.2
Std. dev
1.4601
Skewness
-0.4008
Kurtosis
-1.589
Basic_primer_coverageinteger800 – 124mean 78.62
Min.
0
1st Qu.
50.25
Median
96
Mean
78.625
3rd Qu.
114.5
Max.
124
Std. dev
47.2257
Skewness
-0.5441
Kurtosis
-1.532
Zeros
1
Basic_Coverage_Rationumeric800 – 0.8435mean 0.5349
Min.
0
1st Qu.
0.3418
Median
0.6531
Mean
0.5349
3rd Qu.
0.7789
Max.
0.8435
Std. dev
0.3213
Skewness
-0.5441
Kurtosis
-1.532
Zeros
1
Basic_Binding_Position_Start_fw
character
8
0
0 – 371 characters·1 blank
Basic_Binding_Position_End_fw
character
8
0
0 – 371 characters·1 blank
Basic_Binding_Position_Start_rev
character
1
0
0 characters·8 blank
Basic_Binding_Position_End_rev
character
1
0
0 characters·8 blank
Basic_Binding_Region_Allowed
character
8
0
0 – 743 characters·1 blank
Basic_Binding_Region_Allowed_fw
character
8
0
0 – 743 characters·1 blank
Basic_Binding_Region_Allowed_rev
character
1
0
0 characters·8 blank
Basic_Nbr_of_mismatches_fw
character
8
0
0 – 247 characters·1 blank
Basic_Nbr_of_mismatches_rev
character
1
0
0 characters·8 blank
Basic_Mismatch_pos_fw
character
8
0
0 – 1,189 characters·1 blank
Basic_Mismatch_pos_rev
character
1
0
0 characters·8 blank
Basic_Covered_Seqs
character
8
0
0 – 417 characters·1 blank
Basic_Relative_Forward_Binding_Position_Start_fw
character
8
0
0 – 247 characters·1 blank
Basic_Relative_Forward_Binding_Position_End_fw
character
8
0
0 – 371 characters·1 blank
Basic_Relative_Forward_Binding_Position_Start_rev
character
1
0
0 characters·8 blank
Basic_Relative_Forward_Binding_Position_End_rev
character
1
0
0 characters·8 blank
Basic_Relative_Reverse_Binding_Position_Start_fw
character
8
0
0 – 495 characters·1 blank
Basic_Relative_Reverse_Binding_Position_End_fw
character
8
0
0 – 495 characters·1 blank
Basic_Relative_Reverse_Binding_Position_Start_rev
character
1
0
0 characters·8 blank
Basic_Relative_Reverse_Binding_Position_End_rev
character
1
0
0 characters·8 blank
Basic_Off_primer_coverageinteger800 – 124mean 78.62
Min.
0
1st Qu.
50.25
Median
96
Mean
78.625
3rd Qu.
114.5
Max.
124
Std. dev
47.2257
Skewness
-0.5441
Kurtosis
-1.532
Zeros
1
Basic_Off_Coverage_Rationumeric800 – 0.8435mean 0.5349
Min.
0
1st Qu.
0.3418
Median
0.6531
Mean
0.5349
3rd Qu.
0.7789
Max.
0.8435
Std. dev
0.3213
Skewness
-0.5441
Kurtosis
-1.532
Zeros
1
Basic_Off_Binding_Position_Start_fw
character
8
0
0 – 371 characters·1 blank
Basic_Off_Binding_Position_End_fw
character
8
0
0 – 371 characters·1 blank
Basic_Off_Binding_Position_Start_rev
character
1
0
0 characters·8 blank
Basic_Off_Binding_Position_End_rev
character
1
0
0 characters·8 blank
Basic_Off_Binding_Region_Allowed
character
8
0
0 – 743 characters·1 blank
Basic_Off_Binding_Region_Allowed_fw
character
8
0
0 – 743 characters·1 blank
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| .S3Class | character | 1 | data.frame |
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.22 | 2025-10-29 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.21 | 2025-07-12 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.20 | 2024-10-29 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.19 | 2024-04-30 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.18 | 2023-10-24 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.17 | 2023-04-25 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.16 | 2022-11-01 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.15 | 2022-04-26 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.14 | 2021-10-26 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.13 | 2021-05-19 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.12 | 2020-11-14 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.11 | 2020-08-14 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.10 | 2019-10-29 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.9 | 2019-05-02 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.8 | 2018-11-10 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.7 | 2018-04-30 | 151 elements | Unchanged | rda · xz version 2 · 12 KB | exact |
| 3.6 | 2018-03-22 | 151 elements | – | rda · xz version 2 · 12 KB | exact |