HCT116_r5
A 4 column sparse matrix for a Hi-C matrix.
Bundled with multiHiCcompare · exported, loads via data()
Class
data.frame
Dimensions
55,092 × 4
Missing
0
Format
rda · xz
version 2 · 42 KB
File
data/HCT116_r5.rda
Fingerprint
6ddab1a1
Format documented
Yes
Source
Data from Rao 2017. See their website at http://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104888
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
integer351016000000 – 51200000mean 2.872e+7
Min.
16000000
1st Qu.
22100000
Median
27500000
Mean
2.87195e+7
3rd Qu.
34500000
Max.
51200000
Std. dev
8.13181e+6
Skewness
0.5055
Kurtosis
-0.638
integer351016000000 – 51200000mean 3.979e+7
Min.
16000000
1st Qu.
34100000
Median
41200000
Mean
3.97929e+7
3rd Qu.
46600000
Max.
51200000
Std. dev
8.07329e+6
Skewness
-0.5794
Kurtosis
-0.5611
Order
ascending
integer1,00301 – 3661mean 37.85
Min.
1
1st Qu.
4
Median
7
Mean
37.8467
3rd Qu.
12
Max.
3661
Std. dev
226.572
Skewness
11.48
Kurtosis
140.7
Outliers
5,9710 low · 5971 high
Same structure in 5 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.22 | 2025-10-29 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.21 | 2025-04-15 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.20 | 2024-10-29 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.19 | 2024-04-30 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.18 | 2023-10-24 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.17 | 2023-07-01 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.16 | 2022-11-01 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.15 | 2022-04-26 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.14 | 2021-10-26 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.13 | 2021-05-19 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.12 | 2020-10-27 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.11 | 2020-04-27 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.10 | 2019-10-29 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.9 | 2019-05-02 | 55,092 × 4 | Unchanged | rda · xz version 2 · 42 KB | exact |
| 3.8 | 2018-10-30 | 55,092 × 4 | – | rda · xz version 2 · 42 KB | exact |