Skip to content

combined

Bundled with msPurity · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
45 × 32
Missing
249
Format
tsv · none
11 KB
File
inst/extdata/tests/external_annotations/combined.tsv
Fingerprint
f09bbde2
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
grpid
integer
4
0
12 – 27mean 17.53
Min.
12
1st Qu.
12
Median
12
Mean
17.5333
3rd Qu.
27
Max.
27
Std. dev
6.917
Skewness
0.5755
Kurtosis
-1.609
Order
ascending
inchikey
character
44
0
27 – 64 characters
grp_name
character
4
0
7 characters
mz
numeric
4
0
116.071 – 132.102mean 121.9
Min.
116.071
1st Qu.
116.071
Median
116.071
Mean
121.939
3rd Qu.
132.102
Max.
132.102
Std. dev
7.3997
Skewness
0.591
Kurtosis
-1.6
Order
ascending
rt
numeric
4
0
41.0234 – 73.5548mean 55.78
Min.
41.0234
1st Qu.
47.7347
Median
47.7347
Mean
55.7781
3rd Qu.
73.5548
Max.
73.5548
Std. dev
12.8542
Skewness
0.6084
Kurtosis
-1.54
fragmentation_acquistion_num
character
2
6
15 – 23 characters
mean_precursor_ion_purity
numeric
2
6
0.99 – 1·6 NaN
Min.
0.99
1st Qu.
0.99
Median
0.99
Mean
0.9938
3rd Qu.
1
Max.
1
Std. dev
0.0049
Skewness
0.4562
Kurtosis
-1.837
Order
ascending
NaN
6of the missing
Longest gap
6
name
character
44
0
7 – 55 characters
exact_mass
numeric
29
1
71.073 – 131.095·1 NaN
Min.
71.073
1st Qu.
73.8405
Median
79.073
Mean
84.6495
3rd Qu.
84.3023
Max.
131.095
Std. dev
17.1823
Skewness
1.631
Kurtosis
1.108
Outliers
70 low · 7 high
NaN
1of the missing
molecular_formula
character
10
1
5 – 8 characters
pubchem_cids
character
43
1
3 – 17 characters
kegg_ids
character
10
34
6 – 13 characters
kegg_drug
character
3
42
6 characters
kegg_brite1
character
4
36
24 – 65 characters
kegg_brite2
character
6
36
8 – 61 characters
id
integer
2
43
5325 – 53807mean 29566
Min.
5325
1st Qu.
17445.5
Median
29566
Mean
29566
3rd Qu.
41686.5
Max.
53807
Std. dev
34282
Order
ascending
Longest gap
23
Leading
23
accession
character
2
43
8 – 18 characters
sirius_id
integer
3
0
0 – 2mean 1
Min.
0
1st Qu.
0
Median
1
Mean
1
3rd Qu.
2
Max.
2
Std. dev
0.7977
Skewness
-1.086e-15
Kurtosis
-1.464
Zeros
14
sirius_score
numeric
2
0
0 – 1mean 0.6889
Min.
0
1st Qu.
0
Median
1
Mean
0.6889
3rd Qu.
1
Max.
1
Std. dev
0.4682
Skewness
-0.789
Kurtosis
-1.407
Zeros
14
sirius_wscore
numeric
2
0
0 – 0.25mean 0.1722
Min.
0
1st Qu.
0
Median
0.25
Mean
0.1722
3rd Qu.
0.25
Max.
0.25
Std. dev
0.117
Skewness
-0.789
Kurtosis
-1.407
Zeros
14
metfrag_id
integer
7
0
0 – 10mean 0.8667
Min.
0
1st Qu.
0
Median
0
Mean
0.8667
3rd Qu.
0
Max.
10
Std. dev
2.4918
Skewness
2.699
Kurtosis
5.867
Zeros
39
metfrag_score
integer
2
0
0 – 1mean 0.0444
Min.
0
1st Qu.
0
Median
0
Mean
0.0444
3rd Qu.
0
Max.
1
Std. dev
0.2084
Skewness
4.275
Kurtosis
16.64
Zeros
43
metfrag_wscore
numeric
2
0
0 – 0.25mean 0.0111
Min.
0
1st Qu.
0
Median
0
Mean
0.0111
3rd Qu.
0
Max.
0.25
Std. dev
0.0521
Skewness
4.275
Kurtosis
16.64
Zeros
43
sm_lpid
integer
3
0
0 – 53807mean 1314
Min.
0
1st Qu.
0
Median
0
Mean
1314.04
3rd Qu.
0
Max.
53807
Std. dev
8042.28
Skewness
6.178
Kurtosis
37.34
Zeros
43
sm_mid
integer
3
0
0 – 2mean 0.0667
Min.
0
1st Qu.
0
Median
0
Mean
0.0667
3rd Qu.
0
Max.
2
Std. dev
0.3303
Skewness
4.95
Kurtosis
24.51
Zeros
43
sm_score
numeric
3
0
0 – 0.9409mean 0.0404
Min.
0
1st Qu.
0
Median
0
Mean
0.0404
3rd Qu.
0
Max.
0.9409
Std. dev
0.1897
Skewness
4.283
Kurtosis
16.75
Zeros
43
sm_wscore
numeric
3
0
0 – 0.3764mean 0.0162
Min.
0
1st Qu.
0
Median
0
Mean
0.0162
3rd Qu.
0
Max.
0.3764
Std. dev
0.0759
Skewness
4.283
Kurtosis
16.75
Zeros
43
probmetab_id
integer
7
0
0 – 6mean 0.4667
Min.
0
1st Qu.
0
Median
0
Mean
0.4667
3rd Qu.
0
Max.
6
Std. dev
1.3585
Skewness
2.861
Kurtosis
7.207
Zeros
39
probmetab_score
numeric
7
0
0 – 0.512mean 0.0444
Min.
0
1st Qu.
0
Median
0
Mean
0.0444
3rd Qu.
0
Max.
0.512
Std. dev
0.1227
Skewness
2.665
Kurtosis
6.222
Zeros
39
probmetab_wscore
numeric
7
0
0 – 0.0512mean 0.0044
Min.
0
1st Qu.
0
Median
0
Mean
0.0044
3rd Qu.
0
Max.
0.0512
Std. dev
0.0123
Skewness
2.665
Kurtosis
6.222
Zeros
39
wscore
numeric
10
0
0 – 0.3764mean 0.204
Min.
0
1st Qu.
0.25
Median
0.25
Mean
0.204
3rd Qu.
0.25
Max.
0.3764
Std. dev
0.1026
Skewness
-1.082
Kurtosis
-0.2638
Zeros
4
rank
integer
4
0
1 – 4mean 1.644
Min.
1
1st Qu.
1
Median
2
Mean
1.6444
3rd Qu.
2
Max.
4
Std. dev
0.6794
Skewness
0.9698
Kurtosis
1.311
Outliers
10 low · 1 high
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2845 × 32Unchangedtsv · none
11 KB
degraded
3.222025-10-2945 × 32Unchangedtsv · none
11 KB
degraded
3.212025-04-1545 × 32Unchangedtsv · none
11 KB
degraded
3.202024-10-2945 × 32Unchangedtsv · none
11 KB
degraded
3.192024-05-1045 × 32Unchangedtsv · none
11 KB
degraded
3.182023-10-2445 × 32Unchangedtsv · none
11 KB
degraded
3.172023-04-2545 × 32Unchangedtsv · none
11 KB
degraded
3.162022-11-0145 × 32Unchangedtsv · none
11 KB
degraded
3.152022-04-2645 × 32Unchangedtsv · none
11 KB
degraded
3.142021-10-2645 × 32Unchangedtsv · none
11 KB
degraded
3.132021-05-1945 × 32Unchangedtsv · none
11 KB
degraded
3.122021-01-1245 × 32Unchangedtsv · none
11 KB
degraded
3.112020-10-0645 × 32Unchangedtsv · none
11 KB
degraded
3.102020-03-2645 × 32Unchangedtsv · none
11 KB
degraded
3.92019-05-0245 × 32–tsv · none
11 KB
degraded

Privacy choices

These apply to this browser and are stored on this device only. Nothing about your choice is sent to us.

Read the privacy policy