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pxd007959

Processed peptide intensity matrix and experimental design table from PXD007959 study

Bundled with msImpute · exported, loads via data()

Class
list
Elements
2
Missing
0
Format
rda · xz
version 3 · 73 KB
File
data/pxd007959.RData
Fingerprint
b346a20d
Format documented
Yes
Source
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD007959
About this object
A list with no shape constraintsRows of cells of visibly different widths, one below the next, with nothing lining them up and nothing in them, and under them a small block with a header band: an element of a list can be another structure. There is no common length, so there is no row count.list

R's general-purpose container. Elements can be any type and any size. R object catalogue

Structure
Distinct
2
Nesting depth
2
Element length
4 – 16
Total length
20
Nested rows
2,125
Nested columns
4
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
samples
list
3
0
nested·16 rows nested
Element length
16 – 16
Total length
64
Nested rows
16
What is inside it
Element
Type
Distinct
Missing
Summary
Name
factor
16
0
Shelley_20160815_QE_EVesicles_514_dCA_UC_Mild1Shelley_20160815_QE_EVesicles_537_dCN_Control1Shelley_20160815_QE_EVesicles_568_dCA_CD_Mild1Shelley_20160815_QE_EVesicles_572_dCN_Control1Shelley_20160815_QE_EVesicles_579_dCA_CD_Moderate1Shelley_20160815_QE_EVesicles_580_dCA_UC_Severe1+12 more
Levels
18
Used
16
Unused
2
Rows per level, the 16 commonest of 18
Shelley_20160815_QE_EVesicles_514_dCA_UC_Mild1Shelley_20160815_QE_EVesicles_537_dCN_Control1Shelley_20160815_QE_EVesicles_568_dCA_CD_Mild1Shelley_20160815_QE_EVesicles_572_dCN_Control1Shelley_20160815_QE_EVesicles_579_dCA_CD_Moderate1Shelley_20160815_QE_EVesicles_580_dCA_UC_Severe1Shelley_20160815_QE_EVesicles_582_dCA_UC_Moderate1Shelley_20160815_QE_EVesicles_590_dCN_Control1Shelley_20160815_QE_EVesicles_594_dCN_Control1Shelley_20160815_QE_EVesicles_607_dCN_Control1Shelley_20160815_QE_EVesicles_616_dCA_UC_Moderate1Shelley_20160815_QE_EVesicles_617_dCA_UC_Severe1Shelley_20160815_QE_EVesicles_618_dCA_CD_Severe1Shelley_20160815_QE_EVesicles_620_dCA_UC_Mild1Shelley_20160815_QE_EVesicles_625_dCN_Control1Shelley_20160815_QE_EVesicles_647_dCN_Control1
Fraction
logical
0
16
0 true·0 false
Longest missing run
16
Leading
16
Trailing
16
Experiment
factor
16
0
HM514_dCA_UC_Mild1HM537_dCN_Control1HM568_dCA_CD_Mild1HM572_dCN_Control1HM579_dCA_CD_Moderate1HM580_dCA_UC_Severe1+12 more
Levels
18
Used
16
Unused
2
Rows per level, the 16 commonest of 18
HM514_dCA_UC_Mild1HM537_dCN_Control1HM568_dCA_CD_Mild1HM572_dCN_Control1HM579_dCA_CD_Moderate1HM580_dCA_UC_Severe1HM582_dCA_UC_Moderate1HM590_dCN_Control1HM594_dCN_Control1HM607_dCN_Control1HM616_dCA_UC_Moderate1HM617_dCA_UC_Severe1HM618_dCA_CD_Severe1HM620_dCA_UC_Mild1HM625_dCN_Control1HM647_dCN_Control1
group
character
4
0
4 – 8 characters
y
list
16
0
nested·2,109 rows nested
Element length
2,109 – 2,109
Total length
33,744
Nested rows
2,109
What is inside it
Element
Type
Distinct
Missing
Summary
Intensity.HM514_dCA_UC_Mild
numeric
1,171
935
464520 – 6242000000mean 6.435e+7
Min.
464520
1st Qu.
4841000
Median
12441500
Mean
6.43473e+7
3rd Qu.
33670250
Max.
6242000000
Std. dev
3.01668e+8
Skewness
12.63
Kurtosis
201
Outliers
1470 low · 147 high
Longest gap
10
Trailing
4
Intensity.HM537_dCN_Control
integer
522
1,585
277410 – 1535300000mean 2.148e+7
Min.
277410
1st Qu.
1497425
Median
4660450
Mean
2.14772e+7
3rd Qu.
12164250
Max.
1535300000
Std. dev
8.25775e+7
Skewness
12.95
Kurtosis
217.9
Outliers
680 low · 68 high
Longest gap
26
Trailing
4
Intensity.HM568_dCA_CD_Mild
numeric
1,400
702
253600 – 5265100000mean 7.832e+7
Min.
253600
1st Qu.
5274600
Median
15382000
Mean
7.83226e+7
3rd Qu.
42510000
Max.
5265100000
Std. dev
2.9205e+8
Skewness
10.3
Kurtosis
139.4
Outliers
1840 low · 184 high
Longest gap
6
Leading
1
Trailing
3
Intensity.HM572_dCN_Control
numeric
979
1,127
367670 – 4332600000mean 6.792e+7
Min.
367670
1st Qu.
3931825
Median
9928350
Mean
6.79164e+7
3rd Qu.
30673000
Max.
4332600000
Std. dev
2.77105e+8
Skewness
8.998
Kurtosis
98.57
Outliers
1240 low · 124 high
Longest gap
12
Leading
4
Trailing
2
Intensity.HM579_dCA_CD_Moderate
numeric
1,399
698
265000 – 4989700000mean 9.104e+7
Min.
265000
1st Qu.
7209150
Median
17826000
Mean
9.10426e+7
3rd Qu.
52358500
Max.
4989700000
Std. dev
2.98e+8
Skewness
9.317
Kurtosis
118.4
Outliers
1860 low · 186 high
Longest gap
9
Leading
4
Trailing
3
Intensity.HM580_dCA_UC_Severe
numeric
968
1,140
458580 – 3981700000mean 5.122e+7
Min.
458580
1st Qu.
4009900
Median
9934400
Mean
5.12226e+7
3rd Qu.
27775000
Max.
3981700000
Std. dev
2.26225e+8
Skewness
12.75
Kurtosis
192.8
Outliers
1230 low · 123 high
Longest gap
11
Leading
2
Intensity.HM582_dCA_UC_Moderate
numeric
1,055
1,049
364780 – 1701500000mean 3.82e+7
Min.
364780
1st Qu.
3170300
Median
8933850
Mean
3.82029e+7
3rd Qu.
24701000
Max.
1701500000
Std. dev
1.173e+8
Skewness
8.127
Kurtosis
86.67
Outliers
1320 low · 132 high
Longest gap
9
Intensity.HM590_dCN_Control
numeric
1,108
994
321260 – 1746600000mean 5.451e+7
Min.
321260
1st Qu.
4420250
Median
11562000
Mean
5.45067e+7
3rd Qu.
33738500
Max.
1746600000
Std. dev
1.55579e+8
Skewness
6.174
Kurtosis
46.82
Outliers
1420 low · 142 high
Longest gap
8
Leading
4
Trailing
2
Intensity.HM594_dCN_Control
numeric
933
1,174
214460 – 4798000000mean 8.687e+7
Min.
214460
1st Qu.
5447250
Median
15700000
Mean
8.68743e+7
3rd Qu.
43843500
Max.
4798000000
Std. dev
3.11337e+8
Skewness
8.734
Kurtosis
97.85
Outliers
1290 low · 129 high
Longest gap
16
Leading
1
Intensity.HM607_dCN_Control
numeric
1,106
998
362080 – 9030400000mean 8.622e+7
Min.
362080
1st Qu.
5498050
Median
16081000
Mean
8.62239e+7
3rd Qu.
45178500
Max.
9030400000
Std. dev
4.04975e+8
Skewness
14.45
Kurtosis
265
Outliers
1510 low · 151 high
Longest gap
9
Leading
4
Intensity.HM616_dCA_UC_Moderate
numeric
994
1,109
341110 – 10442000000mean 9.214e+7
Min.
341110
1st Qu.
6159775
Median
18562000
Mean
9.2136e+7
3rd Qu.
54128250
Max.
10442000000
Std. dev
4.05564e+8
Skewness
18.09
Kurtosis
429.7
Outliers
1300 low · 130 high
Longest gap
12
Leading
1
Trailing
1
Intensity.HM617_dCA_UC_Severe
numeric
1,041
1,060
355040 – 6431100000mean 1.399e+8
Min.
355040
1st Qu.
12809000
Median
32300000
Mean
1.39857e+8
3rd Qu.
97487000
Max.
6431100000
Std. dev
4.20564e+8
Skewness
7.871
Kurtosis
83.31
Outliers
1190 low · 119 high
Longest gap
10
Leading
3
Trailing
1
Intensity.HM618_dCA_CD_Severe
numeric
946
1,159
627830 – 7337000000mean 1.77e+8
Min.
627830
1st Qu.
10256750
Median
28206000
Mean
1.76958e+8
3rd Qu.
79108500
Max.
7337000000
Std. dev
6.51617e+8
Skewness
7.385
Kurtosis
63.84
Outliers
1160 low · 116 high
Longest gap
13
Leading
4
Trailing
1
Intensity.HM620_dCA_UC_Mild
numeric
1,262
842
272250 – 3467700000mean 8.651e+7
Min.
272250
1st Qu.
5246350
Median
14624000
Mean
8.65097e+7
3rd Qu.
43146500
Max.
3467700000
Std. dev
2.96799e+8
Skewness
7.156
Kurtosis
59.78
Outliers
1740 low · 174 high
Longest gap
7
Leading
2
Trailing
2
Intensity.HM625_dCN_Control
numeric
1,083
1,021
493450 – 6390700000mean 5.576e+7
Min.
493450
1st Qu.
4328975
Median
12150000
Mean
5.57562e+7
3rd Qu.
30137750
Max.
6390700000
Std. dev
2.60838e+8
Skewness
16.25
Kurtosis
345.6
Outliers
1370 low · 137 high
Longest gap
9
Leading
1
Trailing
2
Intensity.HM647_dCN_Control
numeric
1,092
1,014
288340 – 7883700000mean 9.424e+7
Min.
288340
1st Qu.
5392650
Median
14940000
Mean
9.42391e+7
3rd Qu.
48384000
Max.
7883700000
Std. dev
3.95711e+8
Skewness
12.45
Kurtosis
201.7
Outliers
1490 low · 149 high
Longest gap
8
Trailing
1

The nested tables do not share one set of columns, so there is no single schema to show.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-282 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.222025-10-292 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.212025-04-152 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.202024-10-292 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.192024-04-302 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.182023-10-242 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.172023-04-252 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.162022-11-012 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.152022-04-262 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.142021-10-262 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.132021-05-192 elementsUnchangedrda · xz
version 3 · 73 KB
exact
3.122020-10-272 elements–rda · xz
version 3 · 73 KB
exact

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