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exampleExpressionMatrix

Example of expression values obtained for GSE14308.

Bundled with fgsea · exported, loads via data()

Class
matrix
Dimensions
10,000 × 12
Missing
0
Format
rda · bzip2
version 2 · 513 KB
File
data/exampleExpressionMatrix.rda
Fingerprint
0e9fd7e4
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
120,000
Missing
0
Min.
1.39333
1st Qu.
8.93096
Median
10.2223
Mean
10.2545
3rd Qu.
11.5013
Max.
16.4019
Std. dev
1.91928
Distinct
31,821
Skewness
0.1026
Kurtosis
0.1953
Outliers
1,304 447 low · 857 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows7.1798.902610.1810.25411.42216.2991.7651
Columns10.14310.23510.25210.25410.310.3420.06468

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
Rows20090, 22121, 20091, 67671, 19241, 67186, 20084, 11837, 16785, 67097, 54127, 19981, …10,000
ColumnsGSM357839, GSM357841, GSM357842, GSM357843, GSM357844, GSM357845, GSM357847, GSM357848, GSM357849, GSM357850, GSM357852, GSM35785312
Columns

This object is 12 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

16 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 12 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2810,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.222026-01-0510,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.212025-07-0710,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.202025-03-1910,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.192024-04-3010,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.182023-10-2410,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.172023-04-2510,000 × 12Unchangedrda · bzip2
version 2 · 513 KB
exact
3.162022-11-0110,000 × 12–rda · bzip2
version 2 · 513 KB
exact

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