demoGOST
The result of a functional enrichment analysis done with `gprofiler2` (https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html).
Bundled with enrichViewNet · exported, loads via data()
Class
list
Elements
2
Missing
0
Format
rda · xz
version 3 · 3.4 KB
File
data/demoGOST.RData
Fingerprint
615fca0d
Format documented
Yes
Source
Source not stated
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
2
Nesting depth
6
Element length
5 – 14
Total length
19
Nested rows
54
Nested columns
14
Elements
Element
Type
Distinct
Missing
Summary
resultlist140nested·54 rows nested
Element length
54 – 54
Total length
756
Nesting depth
2
Nested rows
54
What is inside it
Element
Type
Distinct
Missing
Summary
query
character
1
0
7 characters
significant
logical
1
0
54 true·0 false
p_valuenumeric5400.0001 – 0.0499mean 0.0141
Min.
0.0001
1st Qu.
0.0023
Median
0.011
Mean
0.0141
3rd Qu.
0.0221
Max.
0.0499
Std. dev
0.0135
Skewness
0.9166
Kurtosis
0.0576
term_sizeinteger5401 – 13815mean 4983
Min.
1
1st Qu.
1559
Median
4594
Mean
4983.44
3rd Qu.
8489.5
Max.
13815
Std. dev
4244.33
Skewness
0.5704
Kurtosis
-0.8772
query_size
integer
1
0
15
intersection_sizeinteger1201 – 15mean 9.982
Min.
1
1st Qu.
7.25
Median
11
Mean
9.9815
3rd Qu.
14
Max.
15
Std. dev
4.4446
Skewness
-0.6156
Kurtosis
-1.003
precisionnumeric1200.0667 – 1mean 0.6654
Min.
0.0667
1st Qu.
0.4833
Median
0.7333
Mean
0.6654
3rd Qu.
0.9333
Max.
1
Std. dev
0.2963
Skewness
-0.6156
Kurtosis
-1.003
recallnumeric5400.0011 – 1mean 0.0287
Min.
0.0011
1st Qu.
0.0016
Median
0.0027
Mean
0.0287
3rd Qu.
0.0047
Max.
1
Std. dev
0.1362
Skewness
6.714
Kurtosis
44.9
Outliers
110 low · 11 high
term_id
character
54
0
9 – 21 characters
source
character
8
0
2 – 5 characters
term_name
character
54
0
7 – 81 characters
effective_domain_size
integer
1
0
24109
source_orderinteger5401 – 28756mean 9549
Min.
1
1st Qu.
2031.5
Median
8294.5
Mean
9549.28
3rd Qu.
15627.2
Max.
28756
Std. dev
8128.98
Skewness
0.5286
Kurtosis
-0.7555
parentslist430character
Element class
character
Element length
0 – 4
Total length
98
metalist50nested
Element length
1 – 16
Total length
33
Nesting depth
5
What is inside it
Element
Type
Distinct
Missing
Summary
query_metadatalist110nested
Element length
0 – 11
Total length
24
Nesting depth
2
result_metadatalist110list
Element class
list
Element length
3 – 3
Total length
33
Nesting depth
2
genes_metadatalist20list
Element class
list
Element length
0 – 1
Total length
1
Nesting depth
4
timestamp
character
1
0
32 characters
version
character
1
0
21 characters
Every nested table has these 14 columns
- query
- significant
- p_value
- term_size
- query_size
- intersection_size
- precision
- recall
- term_id
- source
- term_name
- effective_domain_size
- source_order
- parents
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 2 elements | Unchanged | rda · xz version 3 · 3.4 KB | exact |
| 3.22 | 2026-01-06 | 2 elements | Unchanged | rda · xz version 3 · 3.4 KB | exact |
| 3.21 | 2025-10-03 | 2 elements | Unchanged | rda · xz version 3 · 3.4 KB | exact |
| 3.20 | 2024-10-29 | 2 elements | Unchanged | rda · xz version 3 · 3.4 KB | exact |
| 3.19 | 2024-04-30 | 2 elements | Repackaged | rda · xz version 3 · 3.4 KB | exact |
| 3.18 | 2023-10-24 | 2 elements | – | rda · gzip version 3 · 3.8 KB | exact |