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GT_cpdata

Genotypic and Phenotypic data for a CP population

Bundled with enhancer · exported, loads via data()

Class
matrix
Dimensions
363 × 2,889
Missing
0
Format
rda · xz
version 2 · 182 KB
File
data/DT_cpdata.RData
Fingerprint
c3af0a2a
Format documented
Yes
Source
This data was simulated for fruit breeding applications.
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
1,048,707
Missing
0
Min.
-1
1st Qu.
0
Median
0
Mean
0.150158
3rd Qu.
1
Max.
1
Std. dev
0.698498
Distinct
5
Skewness
-0.2143
Kurtosis
-0.9509
Zeros
513,357 49%
Most common
0 49%
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows-0.0218070.110940.148490.150160.182760.494630.056529
Columns-0.59504-0.0495870.440770.150160.509640.595040.40425

The column means vary far more than the row means, so what separates the values runs across the columns.

Dimensions and labels
MarginLabelsCount
RowsP003, P004, P005, P006, P007, P008, P009, P010, P012, P013, P014, P015, …363
Columnsscaffold_50439_2381, scaffold_39344_153, uneak_3436043, uneak_2632033, scaffold_4354_5518, scaffold_50439_2380, scaffold_50439_2377, uneak_651022, uneak_23955064, scaffold_48000_2071, scaffold_50439_2370, scaffold_50439_2379, …2,889
Columns

This object is 2,889 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Version history
VersionReleasedSizeChangeStored asConfidence
1.1.22026-10-05363 × 2,889Unchangedrda · xz
version 2 · 182 KB
exact
1.1.12026-04-12363 × 2,889Unchangedrda · xz
version 2 · 182 KB
exact
1.1.02025-11-17363 × 2,889–rda · xz
version 2 · 182 KB
exact

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