HumanCellTypeMethAtlas

The comprehensive human methylome reference atlas

Bundled with deconvR · exported, loads via data()

Class

data.frame

Dimensions

6,105 × 26

Missing

Format

rda · xz

version 3 · 287 KB

File

data/HumanCellTypeMethAtlas.rda

Fingerprint

f0ee3d65

About this object

A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue

Columns

Column

Type

Distinct

Missing

Summary

IDs

character

6,105

10 characters

Monocytes_EPIC

numeric

2,635

0.0012 – 0.9888mean 0.4948

Min.

0.0012

1st Qu.

0.0314

Median

0.591

Mean

0.4948

3rd Qu.

0.9485

Max.

0.9888

Std. dev

0.4341

Skewness

-0.0333

Kurtosis

-1.907

B.cells_EPIC

numeric

3,136

0.0008 – 0.9875mean 0.5172

Min.

0.0008

1st Qu.

0.0634

Median

0.6238

Mean

0.5172

3rd Qu.

0.9468

Max.

0.9875

Std. dev

0.4142

Skewness

-0.0839

Kurtosis

-1.855

CD4T.cells_EPIC

numeric

3,043

0.0015 – 0.9878mean 0.5083

Min.

0.0015

1st Qu.

0.054

Median

0.5932

Mean

0.5083

3rd Qu.

0.9421

Max.

0.9878

Std. dev

0.4172

Skewness

-0.0643

Kurtosis

-1.863

NK.cells_EPIC

numeric

2,890

0.0013 – 0.9874mean 0.4979

Min.

0.0013

1st Qu.

0.0404

Median

0.5664

Mean

0.4979

3rd Qu.

0.9406

Max.

0.9874

Std. dev

0.4227

Skewness

-0.0444

Kurtosis

-1.874

CD8T.cells_EPIC

numeric

3,115

0.0015 – 0.9885mean 0.5163

Min.

0.0015

1st Qu.

0.0648

Median

0.5786

Mean

0.5163

3rd Qu.

0.9457

Max.

0.9885

Std. dev

0.413

Skewness

-0.0742

Kurtosis

-1.847

Neutrophils_EPIC

numeric

2,727

0.0012 – 0.987mean 0.4891

Min.

0.0012

1st Qu.

0.0314

Median

0.5644

Mean

0.4891

3rd Qu.

0.94

Max.

0.987

Std. dev

0.4298

Skewness

-0.0227

Kurtosis

-1.897

Erythrocyte_progenitors

numeric

2,433

0 – 0.994mean 0.5108

Min.

1st Qu.

0.0223

Median

0.7432

Mean

0.5108

3rd Qu.

0.9649

Max.

0.994

Std. dev

0.4462

Skewness

-0.0909

Kurtosis

-1.915

Zeros

Adipocytes

numeric

3,189

0 – 0.9918mean 0.4938

Min.

1st Qu.

0.0412

Median

0.5542

Mean

0.4938

3rd Qu.

0.9288

Max.

0.9918

Std. dev

0.4161

Skewness

-0.0397

Kurtosis

-1.836

Zeros

Cortical_neurons

numeric

3,818

0 – 0.99mean 0.5028

Min.

1st Qu.

0.0777

Median

0.5852

Mean

0.5028

3rd Qu.

0.8922

Max.

0.99

Std. dev

0.3834

Skewness

-0.0882

Kurtosis

-1.747

Zeros

Hepatocytes

numeric

3,148

0 – 0.9923mean 0.4946

Min.

1st Qu.

0.0433

Median

0.6027

Mean

0.4946

3rd Qu.

0.9185

Max.

0.9923

Std. dev

0.4158

Skewness

-0.0499

Kurtosis

-1.864

Zeros

Lung_cells

numeric

3,074

0 – 0.9914mean 0.4867

Min.

1st Qu.

0.0395

Median

0.5367

Mean

0.4867

3rd Qu.

0.9211

Max.

0.9914

Std. dev

0.4178

Skewness

-0.0127

Kurtosis

-1.873

Zeros

Pancreatic_beta_cells

numeric

5,012

0 – 0.9903mean 0.4984

Min.

1st Qu.

0.0534

Median

0.574

Mean

0.4984

3rd Qu.

0.9185

Max.

0.9903

Std. dev

0.4066

Skewness

-0.0596

Kurtosis

-1.821

Zeros

Pancreatic_acinar_cells

numeric

3,377

0 – 0.9901mean 0.4989

Min.

1st Qu.

0.056

Median

0.5845

Mean

0.4989

3rd Qu.

0.9131

Max.

0.9901

Std. dev

0.4046

Skewness

-0.0624

Kurtosis

-1.828

Zeros

Pancreatic_duct_cells

numeric

2,906

0 – 0.9922mean 0.497

Min.

1st Qu.

0.0396

Median

0.6225

Mean

0.497

3rd Qu.

0.9348

Max.

0.9922

Std. dev

0.4266

Skewness

-0.0438

Kurtosis

-1.898

Zeros

Vascular_endothelial_cells

numeric

3,274

0 – 0.9901mean 0.4891

Min.

1st Qu.

0.0546

Median

0.5565

Mean

0.4891

3rd Qu.

0.8984

Max.

0.9901

Std. dev

0.3987

Skewness

-0.0388

Kurtosis

-1.827

Zeros

Colon_epithelial_cells

numeric

2,996

0 – 0.993mean 0.5132

Min.

1st Qu.

0.0429

Median

0.6553

Mean

0.5132

3rd Qu.

0.9386

Max.

0.993

Std. dev

0.4211

Skewness

-0.104

Kurtosis

-1.859

Zeros

Left_atrium

numeric

3,234

0 – 0.9934mean 0.5025

Min.

1st Qu.

0.0482

Median

0.607

Mean

0.5025

3rd Qu.

0.9308

Max.

0.9934

Std. dev

0.4141

Skewness

-0.0602

Kurtosis

-1.835

Zeros

Bladder

numeric

3,462

0 – 0.9932mean 0.5122

Min.

1st Qu.

0.0727

Median

0.5905

Mean

0.5122

3rd Qu.

0.9278

Max.

0.9932

Std. dev

0.4044

Skewness

-0.0736

Kurtosis

-1.815

Zeros

Breast

numeric

3,511

0.001 – 0.9927mean 0.517

Min.

0.001

1st Qu.

0.0739

Median

0.6468

Mean

0.517

3rd Qu.

0.9198

Max.

0.9927

Std. dev

0.4005

Skewness

-0.1154

Kurtosis

-1.799

Head_and_neck_larynx

numeric

3,425

0.0003 – 0.993mean 0.5018

Min.

0.0003

1st Qu.

0.0644

Median

0.587

Mean

0.5018

3rd Qu.

0.9214

Max.

0.993

Std. dev

0.4062

Skewness

-0.0486

Kurtosis

-1.826

Kidney

numeric

3,341

0.0012 – 0.9928mean 0.5003

Min.

0.0012

1st Qu.

0.0533

Median

0.5742

Mean

0.5003

3rd Qu.

0.9199

Max.

0.9928

Std. dev

0.41

Skewness

-0.0475

Kurtosis

-1.826

Prostate

numeric

3,427

0.0005 – 0.9909mean 0.5105

Min.

0.0005

1st Qu.

0.0715

Median

0.5896

Mean

0.5105

3rd Qu.

0.9294

Max.

0.9909

Std. dev

0.4063

Skewness

-0.0645

Kurtosis

-1.825

Thyroid

numeric

3,038

0.0007 – 0.9926mean 0.5088

Min.

0.0007

1st Qu.

0.0494

Median

0.6005

Mean

0.5088

3rd Qu.

0.9398

Max.

0.9926

Std. dev

0.4208

Skewness

-0.0691

Kurtosis

-1.861

Upper_GI

numeric

3,377

0 – 0.9934mean 0.5018

Min.

1st Qu.

0.0636

Median

0.5637

Mean

0.5018

3rd Qu.

0.9269

Max.

0.9934

Std. dev

0.4081

Skewness

-0.0376

Kurtosis

-1.837

Zeros

Uterus_cervix

numeric

3,241

0.0009 – 0.9903mean 0.5049

Min.

0.0009

1st Qu.

0.0569

Median

0.5922

Mean

0.5049

3rd Qu.

0.9272

Max.

0.9903

Std. dev

0.412

Skewness

-0.0622

Kurtosis

-1.846

Version history

Version	Released	Rows × Cols	Change	Stored as	Confidence
3.23	2026-04-28	6,105 × 26	Unchanged	rda · xz version 3 · 287 KB	exact
3.22	2025-10-29	6,105 × 26	Repackaged	rda · xz version 3 · 287 KB	exact
3.21	2025-07-28	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.20	2024-10-29	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.19	2024-04-30	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.18	2023-10-24	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.17	2023-04-25	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.16	2023-04-04	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.15	2022-05-11	6,105 × 26	Unchanged	rda · bzip2 version 2 · 286 KB	exact
3.14	2021-10-28	6,105 × 26	–	rda · bzip2 version 2 · 286 KB	exact