Skip to content

expr_norm_corr

Small portion of RNA-seq data from plant physiology study.

Bundled with dearseq · exported, loads via data()

Class
matrix
Dimensions
2,454 × 48
Missing
0
Format
rda · xz
version 2 · 274 KB
File
data/baduel_5gs.RData
Fingerprint
dd0f50a3
Format documented
Yes
Source
http://www.ncbi.nlm.nih.gov/bioproject/PRJNA312410
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
117,792
Missing
0
Min.
0
1st Qu.
66.9399
Median
214.142
Mean
409.966
3rd Qu.
507.591
Max.
15736.6
Std. dev
594.124
Distinct
45,905
Skewness
3.931
Kurtosis
27.4
Zeros
3,921 3.3%
Outliers
9,061 0 low · 9061 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows087.755234.2409.97517.065048.5541.14
Columns330.54368.74400.13409.97441.59559.2654.477

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
Rows314227, 314925, 315285, 317449, 319024, 319178, 321633, 323006, 323436, 323856, 327563, 329070, …2,454
ColumnsKA_3_1, KA_3_2, KA_3_3, TBG_3_1, TBG_3_2, TBG_3_3, KA_4_1, KA_4_2, KA_4_3, TBG_4_1, TBG_4_2, TBG_4_3, …48
Columns

This object is 48 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

The same data in 1 other package

This data is identical to the data these packages carry, down to the byte.

Structure fingerprint

1 other dataset carries the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 48 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-282,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.222025-10-292,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.212025-04-152,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.202024-10-292,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.192024-04-302,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.182023-10-242,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.172023-05-282,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.162022-11-012,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.152022-07-202,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.142021-10-262,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.132021-05-192,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.122020-10-272,454 × 48Unchangedrda · xz
version 2 · 274 KB
exact
3.112020-04-272,454 × 48–rda · xz
version 2 · 274 KB
exact

Privacy choices

These apply to this browser and are stored on this device only. Nothing about your choice is sent to us.

Read the privacy policy