probeAnno
An environment with probe mapping information for the Scerevisiae tiling array
Bundled with davidTiling · exported, loads via data()
Class
–
Missing
–
Format
rda · xz
version 2 · 29 MB
File
data/probeAnno.rda
Fingerprint
–
Source
Probe sequences were obtained from Affymetrix in a file called `S.cerevisiae_tiling.1lq`. The genomic sequences of the S. cerevisiae chromosomes were downloaded from `ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/genomic_sequence/chromosomes/fasta` on 7 Aug 2005, 18:16 BST in 17 files `chr01.fsa`--`chr16.fsa`, and `chrmt.fsa`. The probe sequences were matched against the chromosomal sequencences with the program `MUMmer`, see the script `mapProbesToGenome.sh` (in the `inst/scripts` directory of this package). `MUMmer` results were parsed and processed into the `probeAnno` environment with the script `makeProbeAnno.R` (in the `inst/scripts` directory of this package).
Columns
Nothing inside this object was measured, so there is no column list, no counts and no fingerprint to compare it with. The file holds an S4 object this reader can name and not open, so none of its slots were reached. What is recorded is the file it lives in and which releases carry it.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.22 | 2025-10-29 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.21 | 2025-04-15 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.20 | 2024-10-29 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.19 | 2024-04-30 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.18 | 2023-10-24 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.17 | 2023-04-25 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.16 | 2022-11-01 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.15 | 2022-04-26 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.14 | 2021-10-26 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.13 | 2021-05-19 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.12 | 2020-10-27 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.11 | 2020-04-27 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.10 | 2019-10-29 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.9 | 2019-05-02 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.8 | 2018-10-30 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.7 | 2018-04-30 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.6 | 2017-10-30 | – | Not compared | rda · xz version 2 · 29 MB | degraded |
| 3.5 | 2017-08-16 | – | – | rda · xz version 2 · 29 MB | degraded |