gff
Genomic features of Saccharomyces cerevisiae
Bundled with davidTiling · exported, loads via data()
Class
data.frame
Dimensions
21,729 × 13
Missing
19,654
Format
rda · gzip
version 2 · 865 KB
File
data/gff.rda
Fingerprint
c8db4642
Format documented
Yes
Source
Two GFF files were downloaded: `saccharomyces_cerevisiae.gff` from `ftp://genome-ftp.stanford.edu/pub/yeast/data_download/chromosomal_feature` on 7 Aug 2005, 18:16 BST, and `IGR_v24.2.p001.allowoverlap.GFF` from `http://jura.wi.mit.edu/fraenkel/download/release_v24/GFF` upon suggestion from the SGD curators on 30 Aug 2005. (Future versions of SGD's GFF files are likely to include the latter as well). They were parsed, combined and written into the `gff` data.frame with the script `makeProbeAnno.R` in the `inst/scripts` directory of this package.
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
factor170chrIV2,575chrVII1,946chrXV1,825chrXII1,810chrXIII1,682chrXVI1,637+11 more
chrIV2,575chrVII1,946chrXV1,825chrXII1,810chrXIII1,682chrXVI1,637+11 more
Levels
17
Used
17
Rows per level
chrIV2,575chrVII1,946chrXV1,825chrXII1,810chrXIII1,682chrXVI1,637chrII1,486chrXIV1,471chrX1,329chrXI1,197chrV1,185chrVIII1,040chrIX850chrIII663chrVI472chrI387chrMito174
integer13,70401 – 1531883mean 4.462e+5
Min.
1
1st Qu.
185301
Median
391780
Mean
446183
3rd Qu.
649897
Max.
1531883
Std. dev
321968
Skewness
0.8217
Kurtosis
0.291
Outliers
3440 low · 344 high
integer13,701034 – 1531916mean 4.476e+5
Min.
34
1st Qu.
186774
Median
392633
Mean
447639
3rd Qu.
651414
Max.
1531916
Std. dev
321995
Skewness
0.822
Kurtosis
0.2906
Outliers
3470 low · 347 high
integer1701 – 17mean 9.258
Min.
1
1st Qu.
5
Median
10
Mean
9.2576
3rd Qu.
13
Max.
17
Std. dev
4.599
Skewness
-0.1124
Kurtosis
-1.294
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.22 | 2025-10-29 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.21 | 2025-04-15 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.20 | 2024-10-29 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.19 | 2024-04-30 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.18 | 2023-10-24 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.17 | 2023-04-25 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.16 | 2022-11-01 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.15 | 2022-04-26 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.14 | 2021-10-26 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.13 | 2021-05-19 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.12 | 2020-10-27 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.11 | 2020-04-27 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.10 | 2019-10-29 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.9 | 2019-05-02 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.8 | 2018-10-30 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.7 | 2018-04-30 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.6 | 2017-10-30 | 21,729 × 13 | Unchanged | rda · gzip version 2 · 865 KB | exact |
| 3.5 | 2017-08-16 | 21,729 × 13 | – | rda · gzip version 2 · 865 KB | exact |