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tperr1

An empirical error matrix.

Bundled with dada2 · exported, loads via data()

Class
matrix
Dimensions
16 × 41
Missing
0
Format
rda · gzip
version 2 · 3.0 KB
File
data/tperr1.rda
Fingerprint
ba31b0f4
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
656
Missing
0
Min.
2.40003e-5
1st Qu.
0.00230027
Median
0.0297788
Mean
0.25
3rd Qu.
0.319971
Max.
0.999764
Std. dev
0.387382
Distinct
359
Skewness
1.169
Kurtosis
-0.5484
Outliers
151 0 low · 151 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows0.0114990.0207510.0294620.250.269330.938190.39632

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsA2A, A2C, A2G, A2T, C2A, C2C, C2G, C2T, G2A, G2C, G2G, G2T, …16
Columns0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, …41
Columns

This object is 41 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

4 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 41 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2816 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.222025-10-2916 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.212025-04-1516 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.202024-10-2916 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.192024-04-3016 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.182023-10-2416 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.172023-04-2516 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.162022-11-0116 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.152022-04-2616 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.142021-10-2616 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.132021-05-1916 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.122020-10-2716 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.112020-04-2716 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.102020-02-2116 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.92019-05-0716 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.82019-01-0416 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.72018-04-3016 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.62017-10-3016 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.52017-10-0816 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.42017-03-1616 × 41Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.32016-05-2216 × 41–rda · gzip
version 2 · 3.0 KB
exact

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