ex.cliqueGroups
Example m/z processed data
Bundled with cliqueMS · exported, loads via data()
Class
anClique
Elements
7
Missing
0
Format
rda · gzip
version 2 · 85 KB
File
data/ex.cliqueGroups.RData
Fingerprint
6b6244a6
Format documented
Yes
Source
Source not stated
Structure
Distinct
6
Nesting depth
4
Element length
0 – 69
Total length
94
Nested rows
275
Nested columns
12
Elements
Element
Type
Distinct
Missing
Summary
peaklistlist120numeric·275 rows nested
Element class
numeric
Element length
275 – 275
Total length
3,300
Nested rows
275
What is inside it
Element
Type
Distinct
Missing
Summary
mznumeric275062.9631 – 1054.74mean 373.5
Min.
62.9631
1st Qu.
201.567
Median
303.148
Mean
373.475
3rd Qu.
507.651
Max.
1054.74
Std. dev
223.277
Skewness
0.8157
Kurtosis
-0.147
Outliers
30 low · 3 high
mzminnumeric274062.9625 – 1054.73mean 373.5
Min.
62.9625
1st Qu.
201.565
Median
303.148
Mean
373.473
3rd Qu.
507.649
Max.
1054.73
Std. dev
223.276
Skewness
0.8157
Kurtosis
-0.147
Outliers
30 low · 3 high
mzmaxnumeric274062.9634 – 1054.75mean 373.5
Min.
62.9634
1st Qu.
201.568
Median
303.149
Mean
373.477
3rd Qu.
507.653
Max.
1054.75
Std. dev
223.278
Skewness
0.8157
Kurtosis
-0.147
Outliers
30 low · 3 high
rtnumeric116058.539 – 1048.05mean 245.3
Min.
58.539
1st Qu.
89.522
Median
286.415
Mean
245.274
3rd Qu.
361.803
Max.
1048.05
Std. dev
174.761
Skewness
1.272
Kurtosis
3.299
Outliers
50 low · 5 high
rtminnumeric157053.792 – 1047.3mean 242.9
Min.
53.792
1st Qu.
88.023
Median
284.416
Mean
242.865
3rd Qu.
359.926
Max.
1047.3
Std. dev
174.913
Skewness
1.278
Kurtosis
3.338
Outliers
50 low · 5 high
rtmaxnumeric193060.788 – 1048.55mean 248.6
Min.
60.788
1st Qu.
90.772
Median
290.665
Mean
248.631
3rd Qu.
365.178
Max.
1048.55
Std. dev
174.936
Skewness
1.267
Kurtosis
3.26
Outliers
50 low · 5 high
intonumeric2750800.676 – 86941.5mean 7271
Min.
800.676
1st Qu.
1651.5
Median
3390.73
Mean
7271.46
3rd Qu.
7694.54
Max.
86941.5
Std. dev
11261.7
Skewness
3.633
Kurtosis
16.05
Outliers
240 low · 24 high
intbnumeric2750798.176 – 86240.8mean 7155
Min.
798.176
1st Qu.
1638.18
Median
3386.23
Mean
7155.18
3rd Qu.
7462.38
Max.
86240.8
Std. dev
11152.8
Skewness
3.691
Kurtosis
16.47
Outliers
230 low · 23 high
maxonumeric2750503.737 – 54642.1mean 3223
Min.
503.737
1st Qu.
938.812
Median
1715.37
Mean
3222.66
3rd Qu.
3466.84
Max.
54642.1
Std. dev
5321.33
Skewness
6.185
Kurtosis
49.13
Outliers
190 low · 19 high
snnumeric209010 – 54641mean 1269
Min.
10
1st Qu.
37
Median
211
Mean
1269.09
3rd Qu.
1311.5
Max.
54641
Std. dev
3830.8
Skewness
10.44
Kurtosis
136
Outliers
230 low · 23 high
sample
numeric
1
0
1
cliqueGroupnumeric6909 – 275mean 138.3
Min.
9
1st Qu.
72
Median
132
Mean
138.32
3rd Qu.
206.5
Max.
275
Std. dev
80.7196
Skewness
0.0038
Kurtosis
-1.265
networklist100nested
Element length
0 – 2,413
Total length
10,184
Nesting depth
3
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
numeric
1
0
262
[[2]]
logical
1
0
0 true·1 false
[[3]]numeric24401 – 261mean 111.1
Min.
1
1st Qu.
54
Median
108
Mean
111.058
3rd Qu.
166
Max.
261
Std. dev
68.4302
Skewness
0.3438
Kurtosis
-0.9158
[[4]]numeric24600 – 260mean 102.4
Min.
0
1st Qu.
43
Median
96
Mean
102.392
3rd Qu.
160
Max.
260
Std. dev
69.4983
Skewness
0.3667
Kurtosis
-0.8823
Zeros
24
Order
ascending
[[5]]numeric2,41300 – 2412mean 1206
Min.
0
1st Qu.
603
Median
1206
Mean
1206
3rd Qu.
1809
Max.
2412
Std. dev
696.717
Skewness
1.326e-14
Kurtosis
-1.202
Zeros
1
[[6]]numeric2,41300 – 2412mean 1206
Min.
0
1st Qu.
603
Median
1206
Mean
1206
3rd Qu.
1809
Max.
2412
Std. dev
696.717
Skewness
2.871e-17
Kurtosis
-1.202
Zeros
1
Order
ascending
[[7]]numeric24500 – 2413mean 1385
Min.
0
1st Qu.
803.5
Median
1569
Mean
1384.88
3rd Qu.
2091.5
Max.
2413
Std. dev
748.197
Skewness
-0.3307
Kurtosis
-1.205
Zeros
2
Order
ascending
[[8]]numeric24700 – 2413mean 1464
Min.
0
1st Qu.
809
Median
1589
Mean
1464.38
3rd Qu.
2119
Max.
2413
Std. dev
716.019
Skewness
-0.3755
Kurtosis
-1.172
Zeros
1
Order
ascending
[[9]]list40nested
Element length
0 – 3
Total length
5
Nesting depth
2
cliqueslist690integer
Element class
integer
Element length
1 – 31
Total length
275
What is inside it
Element
Type
Distinct
Missing
Summary
9integer1801 – 19mean 9.667
Min.
1
1st Qu.
5.25
Median
9.5
Mean
9.6667
3rd Qu.
13.75
Max.
19
Std. dev
5.5941
Skewness
0.1005
Kurtosis
-1.33
Order
ascending
16
integer
1
0
16
23integer13020 – 36mean 26.38
Min.
20
1st Qu.
23
Median
26
Mean
26.3846
3rd Qu.
29
Max.
36
Std. dev
4.6105
Skewness
0.4552
Kurtosis
-0.8198
Order
ascending
31integer2031 – 35mean 33
Min.
31
1st Qu.
32
Median
33
Mean
33
3rd Qu.
34
Max.
35
Std. dev
2.8284
Order
ascending
33integer2033 – 34mean 33.5
Min.
33
1st Qu.
33.25
Median
33.5
Mean
33.5
3rd Qu.
33.75
Max.
34
Std. dev
0.7071
Order
ascending
50integer23037 – 65mean 48.61
Min.
37
1st Qu.
42.5
Median
48
Mean
48.6087
3rd Qu.
53.5
Max.
65
Std. dev
7.884
Skewness
0.4239
Kurtosis
-0.7745
Order
ascending
57integer4057 – 61mean 59
Min.
57
1st Qu.
57.75
Median
59
Mean
59
3rd Qu.
60.25
Max.
61
Std. dev
1.8257
Skewness
0
Kurtosis
-2.235
Order
ascending
62
integer
1
0
62
63integer2063 – 66mean 64.5
Min.
63
1st Qu.
63.75
Median
64.5
Mean
64.5
3rd Qu.
65.25
Max.
66
Std. dev
2.1213
Order
ascending
72integer9067 – 75mean 71
Min.
67
1st Qu.
69
Median
71
Mean
71
3rd Qu.
73
Max.
75
Std. dev
2.7386
Skewness
0
Kurtosis
-1.601
Order
ascending
82integer16076 – 92mean 83.56
Min.
76
1st Qu.
79.75
Median
83.5
Mean
83.5625
3rd Qu.
87.25
Max.
92
Std. dev
4.8713
Skewness
0.0679
Kurtosis
-1.34
Order
ascending
93integer2091 – 93mean 92
Min.
91
1st Qu.
91.5
Median
92
Mean
92
3rd Qu.
92.5
Max.
93
Std. dev
1.4142
Order
ascending
104integer31094 – 124mean 109
Min.
94
1st Qu.
101.5
Median
109
Mean
109
3rd Qu.
116.5
Max.
124
Std. dev
9.0921
Skewness
-2.865e-17
Kurtosis
-1.317
Order
ascending
263
integer
1
0
125
264
integer
1
0
126
126integer20127 – 128mean 127.5
Min.
127
1st Qu.
127.25
Median
127.5
Mean
127.5
3rd Qu.
127.75
Max.
128
Std. dev
0.7071
Order
ascending
129integer30129 – 131mean 130
Min.
129
1st Qu.
129.5
Median
130
Mean
130
3rd Qu.
130.5
Max.
131
Std. dev
1
Skewness
0
Kurtosis
-2.333
Order
ascending
132integer120132 – 143mean 137.5
Min.
132
1st Qu.
134.75
Median
137.5
Mean
137.5
3rd Qu.
140.25
Max.
143
Std. dev
3.6056
Skewness
-3.701e-17
Kurtosis
-1.502
Order
ascending
142
integer
1
0
144
143
integer
1
0
145
144
integer
1
0
146
145
integer
1
0
147
160integer130148 – 165mean 157.3
Min.
148
1st Qu.
153
Median
157
Mean
157.308
3rd Qu.
162
Max.
165
Std. dev
5.6919
Skewness
-0.2133
Kurtosis
-1.482
Order
ascending
148integer20150 – 151mean 150.5
Min.
150
1st Qu.
150.25
Median
150.5
Mean
150.5
3rd Qu.
150.75
Max.
151
Std. dev
0.7071
Order
ascending
156integer30154 – 159mean 157
Min.
154
1st Qu.
156
Median
158
Mean
157
3rd Qu.
158.5
Max.
159
Std. dev
2.6458
Skewness
-0.324
Kurtosis
-2.333
Order
ascending
164
integer
1
0
166
180integer160167 – 182mean 174.5
Min.
167
1st Qu.
170.75
Median
174.5
Mean
174.5
3rd Qu.
178.25
Max.
182
Std. dev
4.761
Skewness
-5.551e-17
Kurtosis
-1.426
Order
ascending
181integer20183 – 184mean 183.5
Min.
183
1st Qu.
183.25
Median
183.5
Mean
183.5
3rd Qu.
183.75
Max.
184
Std. dev
0.7071
Order
ascending
183
integer
1
0
185
185integer20186 – 187mean 186.5
Min.
186
1st Qu.
186.25
Median
186.5
Mean
186.5
3rd Qu.
186.75
Max.
187
Std. dev
0.7071
Order
ascending
186
integer
1
0
188
189integer30189 – 191mean 190
Min.
189
1st Qu.
189.5
Median
190
Mean
190
3rd Qu.
190.5
Max.
191
Std. dev
1
Skewness
0
Kurtosis
-2.333
Order
ascending
203integer50192 – 205mean 197.6
Min.
192
1st Qu.
196
Median
197
Mean
197.6
3rd Qu.
198
Max.
205
Std. dev
4.7223
Skewness
0.428
Kurtosis
-1.396
Outliers
21 low · 1 high
Order
ascending
191
integer
1
0
193
192
integer
1
0
194
193
integer
1
0
195
198integer40199 – 202mean 200.5
Min.
199
1st Qu.
199.75
Median
200.5
Mean
200.5
3rd Qu.
201.25
Max.
202
Std. dev
1.291
Skewness
0
Kurtosis
-2.078
Order
ascending
201
integer
1
0
203
202
integer
1
0
204
265
integer
1
0
206
205integer20207 – 208mean 207.5
Min.
207
1st Qu.
207.25
Median
207.5
Mean
207.5
3rd Qu.
207.75
Max.
208
Std. dev
0.7071
Order
ascending
206
integer
1
0
209
207
integer
1
0
210
210integer20211 – 213mean 212
Min.
211
1st Qu.
211.5
Median
212
Mean
212
3rd Qu.
212.5
Max.
213
Std. dev
1.4142
Order
ascending
209
integer
1
0
212
223integer160214 – 229mean 221.5
Min.
214
1st Qu.
217.75
Median
221.5
Mean
221.5
3rd Qu.
225.25
Max.
229
Std. dev
4.761
Skewness
-5.551e-17
Kurtosis
-1.426
Order
ascending
232integer70230 – 236mean 233
Min.
230
1st Qu.
231.5
Median
233
Mean
233
3rd Qu.
234.5
Max.
236
Std. dev
2.1602
Skewness
0
Kurtosis
-1.714
Order
ascending
238integer20237 – 249mean 243
Min.
237
1st Qu.
240
Median
243
Mean
243
3rd Qu.
246
Max.
249
Std. dev
8.4853
Order
ascending
235integer20238 – 241mean 239.5
Min.
238
1st Qu.
238.75
Median
239.5
Mean
239.5
3rd Qu.
240.25
Max.
241
Std. dev
2.1213
Order
ascending
237integer20239 – 240mean 239.5
Min.
239
1st Qu.
239.25
Median
239.5
Mean
239.5
3rd Qu.
239.75
Max.
240
Std. dev
0.7071
Order
ascending
cliquesFound
logical
1
0
1 true·0 false
isotopes
list
0
0
nested
isoFound
logical
1
0
0 true·1 false
anFound
logical
1
0
0 true·1 false
Every nested table has these 12 columns
- mz
- mzmin
- mzmax
- rt
- rtmin
- rtmax
- into
- intb
- maxo
- sn
- sample
- cliqueGroup
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 0.3.1 | 2019-04-25 | 7 elements | Unchanged | rda · gzip version 2 · 85 KB | exact |
| 0.3.0 | 2019-01-30 | 7 elements | Unchanged | rda · gzip version 2 · 85 KB | exact |
| 0.2.4 | 2019-01-10 | 7 elements | Unchanged | rda · gzip version 2 · 85 KB | exact |
| 0.2.3 | 2018-11-15 | 7 elements | Unchanged | rda · gzip version 2 · 85 KB | exact |
| 0.2.1 | 2018-05-14 | 7 elements | – | rda · gzip version 2 · 85 KB | exact |