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Ndata.NaiveBayes

Bundled with cleanUpdTSeq · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
9,219 × 74
Missing
0
Format
rda · gzip
version 3 · 1.2 MB
File
inst/extdata/test-predNaiveBayes.rda
Fingerprint
f3d453a0
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
y
integer
1
0
0
n.A.Downstream
integer
26
0
5 – 30mean 16.38
Min.
5
1st Qu.
13
Median
16
Mean
16.3757
3rd Qu.
19
Max.
30
Std. dev
4.5055
Skewness
0.6889
Kurtosis
0.514
Outliers
1780 low · 178 high
n.C.Downstream
integer
16
0
0 – 16mean 3.911
Min.
0
1st Qu.
2
Median
4
Mean
3.9114
3rd Qu.
5
Max.
16
Std. dev
2.2757
Skewness
0.5245
Kurtosis
0.2679
Zeros
489
Outliers
1480 low · 148 high
n.T.Downstream
integer
21
0
0 – 20mean 5.87
Min.
0
1st Qu.
4
Median
6
Mean
5.8702
3rd Qu.
8
Max.
20
Std. dev
3.0722
Skewness
0.2655
Kurtosis
0.0201
Zeros
373
Outliers
450 low · 45 high
n.G.Downstream
integer
18
0
0 – 17mean 3.843
Min.
0
1st Qu.
2
Median
4
Mean
3.8427
3rd Qu.
5
Max.
17
Std. dev
2.3028
Skewness
0.6424
Kurtosis
0.6318
Zeros
516
Outliers
1630 low · 163 high
avg.distanceA2PeakEnd
numeric
1,329
0
3 – 17.7mean 12.12
Min.
3
1st Qu.
10.9231
Median
12.2941
Mean
12.1224
3rd Qu.
13.4762
Max.
17.7
Std. dev
1.9584
Skewness
-0.5869
Kurtosis
0.8015
Outliers
125121 low · 4 high
AA
integer
26
0
4 – 29mean 10.9
Min.
4
1st Qu.
7
Median
10
Mean
10.8966
3rd Qu.
13
Max.
29
Std. dev
5.1278
Skewness
1.329
Kurtosis
1.919
Outliers
3640 low · 364 high
AC
integer
11
0
0 – 11mean 1.573
Min.
0
1st Qu.
1
Median
1
Mean
1.5727
3rd Qu.
2
Max.
11
Std. dev
1.2824
Skewness
0.9619
Kurtosis
1.804
Zeros
1,995
Outliers
6640 low · 664 high
AG
integer
12
0
0 – 11mean 1.556
Min.
0
1st Qu.
1
Median
1
Mean
1.5559
3rd Qu.
2
Max.
11
Std. dev
1.2938
Skewness
1.026
Kurtosis
2.027
Zeros
2,040
Outliers
6790 low · 679 high
AT
integer
11
0
0 – 10mean 1.995
Min.
0
1st Qu.
1
Median
2
Mean
1.9952
3rd Qu.
3
Max.
10
Std. dev
1.423
Skewness
0.5959
Kurtosis
0.2182
Zeros
1,401
Outliers
330 low · 33 high
CA
integer
12
0
0 – 11mean 1.715
Min.
0
1st Qu.
1
Median
2
Mean
1.7149
3rd Qu.
3
Max.
11
Std. dev
1.3269
Skewness
0.8162
Kurtosis
1.099
Zeros
1,744
Outliers
260 low · 26 high
CC
integer
10
0
0 – 10mean 0.6441
Min.
0
1st Qu.
0
Median
0
Mean
0.6441
3rd Qu.
1
Max.
10
Std. dev
1.0049
Skewness
2.203
Kurtosis
7.348
Zeros
5,536
Outliers
5070 low · 507 high
CG
integer
6
0
0 – 5mean 0.3212
Min.
0
1st Qu.
0
Median
0
Mean
0.3212
3rd Qu.
1
Max.
5
Std. dev
0.5949
Skewness
2.074
Kurtosis
5.397
Zeros
6,783
Outliers
660 low · 66 high
CT
integer
7
0
0 – 6mean 1.05
Min.
0
1st Qu.
0
Median
1
Mean
1.0505
3rd Qu.
2
Max.
6
Std. dev
1.0434
Skewness
0.9715
Kurtosis
0.7904
Zeros
3,323
Outliers
50 low · 5 high
GA
integer
11
0
0 – 10mean 1.29
Min.
0
1st Qu.
0
Median
1
Mean
1.2903
3rd Qu.
2
Max.
10
Std. dev
1.234
Skewness
1.194
Kurtosis
2.308
Zeros
2,801
Outliers
550 low · 55 high
GC
integer
6
0
0 – 5mean 0.6915
Min.
0
1st Qu.
0
Median
1
Mean
0.6915
3rd Qu.
1
Max.
5
Std. dev
0.8223
Skewness
1.149
Kurtosis
1.19
Zeros
4,587
Outliers
2870 low · 287 high
GG
integer
13
0
0 – 13mean 0.6811
Min.
0
1st Qu.
0
Median
0
Mean
0.6811
3rd Qu.
1
Max.
13
Std. dev
1.0668
Skewness
2.456
Kurtosis
10.13
Zeros
5,410
Outliers
5810 low · 581 high
GT
integer
9
0
0 – 10mean 1.006
Min.
0
1st Qu.
0
Median
1
Mean
1.0062
3rd Qu.
2
Max.
10
Std. dev
1.0443
Skewness
1.099
Kurtosis
1.579
Zeros
3,547
Outliers
80 low · 8 high
TA
integer
10
0
0 – 9mean 1.474
Min.
0
1st Qu.
0
Median
1
Mean
1.474
3rd Qu.
2
Max.
9
Std. dev
1.2746
Skewness
0.8608
Kurtosis
0.8
Zeros
2,363
Outliers
490 low · 49 high
TC
integer
8
0
0 – 7mean 1.003
Min.
0
1st Qu.
0
Median
1
Mean
1.003
3rd Qu.
2
Max.
7
Std. dev
1.0585
Skewness
1.095
Kurtosis
1.196
Zeros
3,625
Outliers
90 low · 9 high
TG
integer
9
0
0 – 10mean 1.284
Min.
0
1st Qu.
0
Median
1
Mean
1.2845
3rd Qu.
2
Max.
10
Std. dev
1.1525
Skewness
0.8357
Kurtosis
0.6953
Zeros
2,713
Outliers
170 low · 17 high
TT
integer
19
0
0 – 18mean 1.818
Min.
0
1st Qu.
0
Median
1
Mean
1.8181
3rd Qu.
3
Max.
18
Std. dev
1.9522
Skewness
1.567
Kurtosis
4.002
Zeros
2,912
Outliers
1280 low · 128 high
CAGAAT
factor
2
0
09,0611158
CCGCTG
factor
2
0
09,204115
CCTAAT
factor
2
0
09,185134
AAAGTG
factor
2
0
09,0511168
AGCCAC
factor
2
0
09,162157
CTATCT
factor
2
0
09,189130
TGACAT
factor
2
0
09,0651154
GGCTAC
factor
2
0
09,202117
CCTTGA
factor
2
0
09,162157
ACCCAA
factor
2
0
09,144175
AAACGT
factor
2
0
09,1111108
CCTCTG
factor
2
0
09,172147
GTTAGC
factor
2
0
09,185134
GCGGGT
factor
2
0
09,21118
CTACTA
factor
2
0
09,180139
CCTAAA
factor
2
0
09,1061113
GGAAAG
factor
2
0
09,0951124
TCTTAG
factor
2
0
09,181138
GAGACA
factor
2
0
09,125194
TTACGA
factor
2
0
09,182137
AGTGTC
factor
2
0
09,169150
GGGTTC
factor
2
0
09,188131
ATTTAA
factor
2
0
08,8721347
GGTGGA
factor
2
0
09,169150
CGCAGC
factor
2
0
09,196123
AATAAC
factor
2
0
09,0421177
AATCCC
factor
2
0
09,157162
CACCCA
factor
2
0
09,153166
TAGGAA
factor
2
0
09,140179
ATTTCA
factor
2
0
08,9451274
TAAGGT
factor
2
0
09,176143
GTGACA
factor
2
0
09,153166
CAGTAT
factor
2
0
09,1131106
CGCGAG
factor
2
0
09,21019
AACTCC
factor
2
0
09,163156
GTAGGT
factor
2
0
09,192127
AGCTTG
factor
2
0
09,153166
CAATTG
factor
2
0
09,133186
CTATGC
factor
2
0
09,177142
GACTGA
factor
2
0
09,133186
TCTGCG
factor
2
0
09,195124
GCCCGC
factor
2
0
09,21217
TGCTAC
factor
2
0
09,154165
ACCATA
factor
2
0
09,137182
GGCATG
factor
2
0
09,173146
CAGTTA
factor
2
0
09,126193
CACCGC
factor
2
0
09,202117
AGGGCA
factor
2
0
09,171148
TGGTGC
factor
2
0
09,174145
ATGACT
factor
2
0
09,1141105
upstream.seq
character
9,212
0
40 characters
downstream.seq
character
9,038
0
30 characters
Same structure in 1 other dataset

These datasets share the same columns and types but hold different data.

cleanUpdTSeqPdata.NaiveBayes
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-289,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.222025-10-299,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.212025-04-159,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.202024-10-299,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.192024-04-309,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.182023-10-249,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.172023-04-259,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.162022-11-019,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.152022-04-269,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.142021-10-269,219 × 74Unchangedrda · gzip
version 3 · 1.2 MB
exact
3.132021-05-199,219 × 74Data changed
Dimensions, Class and Missing unchanged
rda · gzip
version 3 · 1.2 MB
exact
3.122020-10-279,219 × 74Repackagedrda · xz
version 3 · 943 KB
exact
3.112020-04-279,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.102019-10-299,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.92019-06-199,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.82019-04-099,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.72018-04-309,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.62017-10-309,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.52017-04-249,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.42016-10-179,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.32016-05-159,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.22015-10-139,219 × 74Unchangedrda · gzip
version 2 · 1.3 MB
exact
3.12015-05-189,219 × 74–rda · gzip
version 2 · 1.3 MB
exact

Dimensions is the row and column count. Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Missing is how many values were recorded as absent.

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