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AlexInitialArtif_sig_df

Data for mutational signatures

Bundled with YAPSA · exported, loads via data()

Class
data.frame
Dimensions
96 × 27
Missing
0
Format
rda · xz
version 2 · 19 KB
File
data/sigs.rda
Fingerprint
b20fc1ff
Source
`AlexInitial`: ftp://ftp.sanger.ac.uk/pub/cancer/AlexandrovEtAl/signatures.txt `AlexCosmic`: https://cancer.sanger.ac.uk/cancergenome/assets/signatures_probabilities.txt
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
A1A
numeric
70
0
0 – 0.171mean 0.0104
Min.
0
1st Qu.
0.0015
Median
0.004
Mean
0.0104
3rd Qu.
0.0094
Max.
0.171
Std. dev
0.0232
Skewness
4.812
Kurtosis
25.88
Zeros
1
Outliers
70 low · 7 high
A1B
numeric
73
0
0.0002 – 0.0673mean 0.0104
Min.
0.0002
1st Qu.
0.0029
Median
0.0067
Mean
0.0104
3rd Qu.
0.0136
Max.
0.0673
Std. dev
0.0115
Skewness
2.206
Kurtosis
6.154
Outliers
60 low · 6 high
A2
numeric
58
0
0 – 0.2116mean 0.0104
Min.
0
1st Qu.
0.0012
Median
0.0024
Mean
0.0104
3rd Qu.
0.0048
Max.
0.2116
Std. dev
0.0309
Skewness
4.707
Kurtosis
23.14
Zeros
1
Outliers
130 low · 13 high
A3
numeric
75
0
0.0007 – 0.0302mean 0.0104
Min.
0.0007
1st Qu.
0.0066
Median
0.0098
Mean
0.0104
3rd Qu.
0.0146
Max.
0.0302
Std. dev
0.0061
Skewness
0.4082
Kurtosis
-0.0282
Outliers
10 low · 1 high
A4
numeric
72
0
0 – 0.0614mean 0.0104
Min.
0
1st Qu.
0.003
Median
0.006
Mean
0.0104
3rd Qu.
0.0104
Max.
0.0614
Std. dev
0.0127
Skewness
2.018
Kurtosis
3.608
Zeros
5
Outliers
140 low · 14 high
A5
numeric
82
0
0.0003 – 0.0352mean 0.0104
Min.
0.0003
1st Qu.
0.0055
Median
0.0096
Mean
0.0104
3rd Qu.
0.0142
Max.
0.0352
Std. dev
0.0066
Skewness
0.9525
Kurtosis
1.122
Outliers
20 low · 2 high
A6
numeric
61
0
0 – 0.1339mean 0.0104
Min.
0
1st Qu.
0.0008
Median
0.0028
Mean
0.0104
3rd Qu.
0.0078
Max.
0.1339
Std. dev
0.0221
Skewness
3.401
Kurtosis
12.3
Zeros
13
Outliers
120 low · 12 high
A7
numeric
38
0
0 – 0.2887mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0008
Mean
0.0104
3rd Qu.
0.0014
Max.
0.2887
Std. dev
0.0367
Skewness
5.309
Kurtosis
33.33
Zeros
21
Outliers
160 low · 16 high
A8
numeric
74
0
0 – 0.0466mean 0.0104
Min.
0
1st Qu.
0.0044
Median
0.007
Mean
0.0104
3rd Qu.
0.0134
Max.
0.0466
Std. dev
0.0093
Skewness
1.412
Kurtosis
1.788
Zeros
5
Outliers
80 low · 8 high
A9
numeric
73
0
0 – 0.0545mean 0.0104
Min.
0
1st Qu.
0.0043
Median
0.0076
Mean
0.0104
3rd Qu.
0.0125
Max.
0.0545
Std. dev
0.0105
Skewness
2.201
Kurtosis
5.602
Zeros
7
Outliers
80 low · 8 high
A10
numeric
53
0
0 – 0.3083mean 0.0104
Min.
0
1st Qu.
0.0002
Median
0.0018
Mean
0.0104
3rd Qu.
0.0056
Max.
0.3083
Std. dev
0.0386
Skewness
6.364
Kurtosis
42.26
Zeros
21
Outliers
100 low · 10 high
A11
numeric
35
0
0 – 0.1589mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0004
Mean
0.0104
3rd Qu.
0.0011
Max.
0.1589
Std. dev
0.03
Skewness
3.429
Kurtosis
11.55
Zeros
18
Outliers
160 low · 16 high
A12
numeric
68
0
0 – 0.0573mean 0.0104
Min.
0
1st Qu.
0.0019
Median
0.0046
Mean
0.0104
3rd Qu.
0.0113
Max.
0.0573
Std. dev
0.0137
Skewness
1.74
Kurtosis
1.924
Zeros
5
Outliers
150 low · 15 high
A13
numeric
42
0
0 – 0.2629mean 0.0104
Min.
0
1st Qu.
0.0002
Median
0.0008
Mean
0.0104
3rd Qu.
0.0021
Max.
0.2629
Std. dev
0.0392
Skewness
5.085
Kurtosis
26.49
Zeros
9
Outliers
130 low · 13 high
A14
numeric
53
0
0 – 0.1257mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0018
Mean
0.0104
3rd Qu.
0.0083
Max.
0.1257
Std. dev
0.0213
Skewness
3.1
Kurtosis
10.72
Zeros
22
Outliers
150 low · 15 high
A15
numeric
71
0
0 – 0.1829mean 0.0104
Min.
0
1st Qu.
0.001
Median
0.0036
Mean
0.0104
3rd Qu.
0.0094
Max.
0.1829
Std. dev
0.0249
Skewness
5.051
Kurtosis
28.26
Zeros
7
Outliers
80 low · 8 high
A16
numeric
79
0
0 – 0.0717mean 0.0104
Min.
0
1st Qu.
0.0042
Median
0.0081
Mean
0.0104
3rd Qu.
0.0145
Max.
0.0717
Std. dev
0.01
Skewness
3.153
Kurtosis
14.76
Zeros
4
Outliers
30 low · 3 high
A17
numeric
62
0
0 – 0.2591mean 0.0104
Min.
0
1st Qu.
0.0008
Median
0.003
Mean
0.0104
3rd Qu.
0.0084
Max.
0.2591
Std. dev
0.0295
Skewness
6.632
Kurtosis
50.45
Zeros
14
Outliers
100 low · 10 high
A18
numeric
61
0
0 – 0.1406mean 0.0104
Min.
0
1st Qu.
0.0014
Median
0.0028
Mean
0.0104
3rd Qu.
0.0066
Max.
0.1406
Std. dev
0.0231
Skewness
3.73
Kurtosis
14.58
Zeros
7
Outliers
150 low · 15 high
A19
numeric
66
0
0 – 0.1159mean 0.0104
Min.
0
1st Qu.
0.0016
Median
0.0043
Mean
0.0104
3rd Qu.
0.0092
Max.
0.1159
Std. dev
0.0187
Skewness
3.461
Kurtosis
13.48
Zeros
11
Outliers
140 low · 14 high
A20
numeric
62
0
0 – 0.1064mean 0.0104
Min.
0
1st Qu.
0.0004
Median
0.0023
Mean
0.0104
3rd Qu.
0.0132
Max.
0.1064
Std. dev
0.0181
Skewness
2.795
Kurtosis
9.145
Zeros
16
Outliers
90 low · 9 high
A21
numeric
60
0
0 – 0.1426mean 0.0104
Min.
0
1st Qu.
0.0003
Median
0.0024
Mean
0.0104
3rd Qu.
0.0093
Max.
0.1426
Std. dev
0.0218
Skewness
3.774
Kurtosis
16.55
Zeros
14
Outliers
130 low · 13 high
AR1
numeric
67
0
0 – 0.4246mean 0.0104
Min.
0
1st Qu.
0.002
Median
0.0041
Mean
0.0104
3rd Qu.
0.007
Max.
0.4246
Std. dev
0.0433
Skewness
9.125
Kurtosis
84.28
Zeros
5
Outliers
90 low · 9 high
AR2
numeric
50
0
0 – 0.3117mean 0.0104
Min.
0
1st Qu.
0.0008
Median
0.0017
Mean
0.0104
3rd Qu.
0.0032
Max.
0.3117
Std. dev
0.0388
Skewness
5.908
Kurtosis
38.53
Zeros
9
Outliers
120 low · 12 high
AR3
numeric
62
0
0 – 0.0958mean 0.0104
Min.
0
1st Qu.
0.001
Median
0.0034
Mean
0.0104
3rd Qu.
0.009
Max.
0.0958
Std. dev
0.0178
Skewness
2.693
Kurtosis
7.59
Zeros
4
Outliers
150 low · 15 high
AU1
numeric
71
0
0 – 0.0671mean 0.0104
Min.
0
1st Qu.
0.0031
Median
0.0074
Mean
0.0104
3rd Qu.
0.0157
Max.
0.0671
Std. dev
0.0116
Skewness
2.377
Kurtosis
7.836
Zeros
11
Outliers
30 low · 3 high
AU2
numeric
78
0
0 – 0.0344mean 0.0104
Min.
0
1st Qu.
0.0058
Median
0.0092
Mean
0.0104
3rd Qu.
0.0133
Max.
0.0344
Std. dev
0.0069
Skewness
0.9467
Kurtosis
0.6452
Zeros
1
Outliers
40 low · 4 high
Same structure in 2 other datasets

These datasets share the same columns and types but hold different data.

YAPSAcutoffInitialArtif_abs_dfYAPSAcutoffInitialArtif_rel_df
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2896 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.222025-11-2896 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.212025-04-1596 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.202024-10-2996 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.192024-04-3096 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.182023-10-2496 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.172023-09-2596 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.162022-11-0196 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.152022-04-2696 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.142021-11-2996 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.132021-05-1996 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.122020-10-2796 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.112020-04-2796 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.102019-10-2996 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.92019-05-0296 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.82018-10-3096 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.72018-04-3096 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.62017-10-3096 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.52017-04-2496 × 27Unchangedrda · xz
version 2 · 19 KB
exact
3.42016-10-1796 × 27–rda · xz
version 2 · 19 KB
exact

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