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AlexCosmicArtif_sig_df

Data for mutational signatures

Bundled with YAPSA · exported, loads via data()

Class
data.frame
Dimensions
96 × 35
Missing
0
Format
rda · xz
version 2 · 19 KB
File
data/sigs.rda
Fingerprint
9b39eb18
Source
`AlexInitial`: ftp://ftp.sanger.ac.uk/pub/cancer/AlexandrovEtAl/signatures.txt `AlexCosmic`: https://cancer.sanger.ac.uk/cancergenome/assets/signatures_probabilities.txt
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
AC1
numeric
96
0
2.4853e-7 – 0.1716mean 0.0104
Min.
2.4853e-7
1st Qu.
0.0015
Median
0.004
Mean
0.0104
3rd Qu.
0.0095
Max.
0.1716
Std. dev
0.0233
Skewness
4.817
Kurtosis
25.87
Outliers
70 low · 7 high
AC2
numeric
96
0
1.3238e-7 – 0.4199mean 0.0104
Min.
1.3238e-7
1st Qu.
0.0001
Median
0.0003
Mean
0.0104
3rd Qu.
0.0008
Max.
0.4199
Std. dev
0.0496
Skewness
6.784
Kurtosis
49.25
Outliers
200 low · 20 high
AC3
numeric
96
0
0.0009 – 0.0327mean 0.0104
Min.
0.0009
1st Qu.
0.0062
Median
0.0092
Mean
0.0104
3rd Qu.
0.0145
Max.
0.0327
Std. dev
0.006
Skewness
0.7453
Kurtosis
0.8426
Outliers
10 low · 1 high
AC4
numeric
72
0
0 – 0.0614mean 0.0104
Min.
0
1st Qu.
0.003
Median
0.006
Mean
0.0104
3rd Qu.
0.0104
Max.
0.0614
Std. dev
0.0127
Skewness
2.018
Kurtosis
3.608
Zeros
5
Outliers
140 low · 14 high
AC5
numeric
96
0
0.0003 – 0.0354mean 0.0104
Min.
0.0003
1st Qu.
0.0055
Median
0.0095
Mean
0.0104
3rd Qu.
0.0141
Max.
0.0354
Std. dev
0.0066
Skewness
0.9667
Kurtosis
1.203
Outliers
30 low · 3 high
AC6
numeric
61
0
0 – 0.1339mean 0.0104
Min.
0
1st Qu.
0.0008
Median
0.0028
Mean
0.0104
3rd Qu.
0.0078
Max.
0.1339
Std. dev
0.0221
Skewness
3.401
Kurtosis
12.3
Zeros
13
Outliers
120 low · 12 high
AC7
numeric
38
0
0 – 0.2887mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0008
Mean
0.0104
3rd Qu.
0.0014
Max.
0.2887
Std. dev
0.0367
Skewness
5.309
Kurtosis
33.33
Zeros
21
Outliers
160 low · 16 high
AC8
numeric
96
0
0 – 0.0381mean 0.0104
Min.
0
1st Qu.
0.0041
Median
0.007
Mean
0.0104
3rd Qu.
0.0153
Max.
0.0381
Std. dev
0.0092
Skewness
1.215
Kurtosis
0.6773
Outliers
40 low · 4 high
AC9
numeric
73
0
0 – 0.0545mean 0.0104
Min.
0
1st Qu.
0.0043
Median
0.0076
Mean
0.0104
3rd Qu.
0.0125
Max.
0.0545
Std. dev
0.0105
Skewness
2.201
Kurtosis
5.602
Zeros
7
Outliers
80 low · 8 high
AC10
numeric
53
0
0 – 0.3083mean 0.0104
Min.
0
1st Qu.
0.0002
Median
0.0018
Mean
0.0104
3rd Qu.
0.0056
Max.
0.3083
Std. dev
0.0386
Skewness
6.364
Kurtosis
42.26
Zeros
21
Outliers
100 low · 10 high
AC11
numeric
35
0
0 – 0.1589mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0004
Mean
0.0104
3rd Qu.
0.0011
Max.
0.1589
Std. dev
0.03
Skewness
3.429
Kurtosis
11.55
Zeros
18
Outliers
160 low · 16 high
AC12
numeric
68
0
0 – 0.0573mean 0.0104
Min.
0
1st Qu.
0.0019
Median
0.0046
Mean
0.0104
3rd Qu.
0.0113
Max.
0.0573
Std. dev
0.0137
Skewness
1.74
Kurtosis
1.924
Zeros
5
Outliers
150 low · 15 high
AC13
numeric
96
0
0 – 0.3302mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0005
Mean
0.0104
3rd Qu.
0.0014
Max.
0.3302
Std. dev
0.0457
Skewness
5.845
Kurtosis
34.91
Zeros
1
Outliers
160 low · 16 high
AC14
numeric
53
0
0 – 0.1257mean 0.0104
Min.
0
1st Qu.
0.0001
Median
0.0018
Mean
0.0104
3rd Qu.
0.0083
Max.
0.1257
Std. dev
0.0213
Skewness
3.1
Kurtosis
10.72
Zeros
22
Outliers
150 low · 15 high
AC15
numeric
71
0
0 – 0.1829mean 0.0104
Min.
0
1st Qu.
0.001
Median
0.0036
Mean
0.0104
3rd Qu.
0.0094
Max.
0.1829
Std. dev
0.0249
Skewness
5.051
Kurtosis
28.26
Zeros
7
Outliers
80 low · 8 high
AC16
numeric
79
0
0 – 0.0717mean 0.0104
Min.
0
1st Qu.
0.0042
Median
0.0081
Mean
0.0104
3rd Qu.
0.0145
Max.
0.0717
Std. dev
0.01
Skewness
3.153
Kurtosis
14.76
Zeros
4
Outliers
30 low · 3 high
AC17
numeric
96
0
1.5762e-6 – 0.2615mean 0.0104
Min.
1.5762e-6
1st Qu.
0.0009
Median
0.003
Mean
0.0104
3rd Qu.
0.0084
Max.
0.2615
Std. dev
0.0297
Skewness
6.678
Kurtosis
51.07
Outliers
110 low · 11 high
AC18
numeric
96
0
9.2043e-7 – 0.1287mean 0.0104
Min.
9.2043e-7
1st Qu.
0.0015
Median
0.003
Mean
0.0104
3rd Qu.
0.0067
Max.
0.1287
Std. dev
0.0222
Skewness
3.665
Kurtosis
13.85
Outliers
150 low · 15 high
AC19
numeric
66
0
0 – 0.1159mean 0.0104
Min.
0
1st Qu.
0.0016
Median
0.0043
Mean
0.0104
3rd Qu.
0.0092
Max.
0.1159
Std. dev
0.0187
Skewness
3.461
Kurtosis
13.48
Zeros
11
Outliers
140 low · 14 high
AC20
numeric
95
0
0 – 0.1034mean 0.0104
Min.
0
1st Qu.
0.0006
Median
0.0024
Mean
0.0104
3rd Qu.
0.0126
Max.
0.1034
Std. dev
0.0176
Skewness
2.748
Kurtosis
8.758
Zeros
2
Outliers
100 low · 10 high
AC21
numeric
60
0
0 – 0.1426mean 0.0104
Min.
0
1st Qu.
0.0003
Median
0.0024
Mean
0.0104
3rd Qu.
0.0093
Max.
0.1426
Std. dev
0.0218
Skewness
3.774
Kurtosis
16.55
Zeros
14
Outliers
130 low · 13 high
AC22
numeric
82
0
0 – 0.2132mean 0.0104
Min.
0
1st Qu.
0.0005
Median
0.0017
Mean
0.0104
3rd Qu.
0.0043
Max.
0.2132
Std. dev
0.0273
Skewness
4.902
Kurtosis
30.12
Zeros
15
Outliers
160 low · 16 high
AC23
numeric
56
0
0 – 0.1864mean 0.0104
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.0104
3rd Qu.
0.0005
Max.
0.1864
Std. dev
0.0332
Skewness
3.854
Kurtosis
14.81
Zeros
40
Outliers
170 low · 17 high
AC24
numeric
87
0
0 – 0.1099mean 0.0104
Min.
0
1st Qu.
0.0011
Median
0.0039
Mean
0.0104
3rd Qu.
0.012
Max.
0.1099
Std. dev
0.0171
Skewness
3.107
Kurtosis
12.05
Zeros
10
Outliers
100 low · 10 high
AC25
numeric
91
0
0 – 0.0629mean 0.0104
Min.
0
1st Qu.
0.0041
Median
0.0089
Mean
0.0104
3rd Qu.
0.0141
Max.
0.0629
Std. dev
0.0096
Skewness
2.318
Kurtosis
8.596
Zeros
6
Outliers
40 low · 4 high
AC26
numeric
96
0
6.197e-9 – 0.0981mean 0.0104
Min.
6.197e-9
1st Qu.
0.0013
Median
0.0033
Mean
0.0104
3rd Qu.
0.0113
Max.
0.0981
Std. dev
0.0163
Skewness
2.616
Kurtosis
8.325
Outliers
120 low · 12 high
AC27
numeric
91
0
0 – 0.3306mean 0.0104
Min.
0
1st Qu.
0.0012
Median
0.0027
Mean
0.0104
3rd Qu.
0.0057
Max.
0.3306
Std. dev
0.038
Skewness
6.856
Kurtosis
51.45
Zeros
6
Outliers
100 low · 10 high
AC28
numeric
88
0
0 – 0.2337mean 0.0104
Min.
0
1st Qu.
0.0005
Median
0.0024
Mean
0.0104
3rd Qu.
0.008
Max.
0.2337
Std. dev
0.0284
Skewness
5.856
Kurtosis
39.53
Zeros
9
Outliers
110 low · 11 high
AC29
numeric
82
0
0 – 0.078mean 0.0104
Min.
0
1st Qu.
0.0009
Median
0.0037
Mean
0.0104
3rd Qu.
0.0115
Max.
0.078
Std. dev
0.0168
Skewness
2.426
Kurtosis
5.54
Zeros
15
Outliers
100 low · 10 high
AC30
numeric
55
0
0 – 0.0903mean 0.0104
Min.
0
1st Qu.
0
Median
0.0047
Mean
0.0104
3rd Qu.
0.0087
Max.
0.0903
Std. dev
0.0187
Skewness
2.662
Kurtosis
6.55
Zeros
31
Outliers
110 low · 11 high
AR1
numeric
67
0
0 – 0.4246mean 0.0104
Min.
0
1st Qu.
0.002
Median
0.0041
Mean
0.0104
3rd Qu.
0.007
Max.
0.4246
Std. dev
0.0433
Skewness
9.125
Kurtosis
84.28
Zeros
5
Outliers
90 low · 9 high
AR2
numeric
50
0
0 – 0.3117mean 0.0104
Min.
0
1st Qu.
0.0008
Median
0.0017
Mean
0.0104
3rd Qu.
0.0032
Max.
0.3117
Std. dev
0.0388
Skewness
5.908
Kurtosis
38.53
Zeros
9
Outliers
120 low · 12 high
AR3
numeric
62
0
0 – 0.0958mean 0.0104
Min.
0
1st Qu.
0.001
Median
0.0034
Mean
0.0104
3rd Qu.
0.009
Max.
0.0958
Std. dev
0.0178
Skewness
2.693
Kurtosis
7.59
Zeros
4
Outliers
150 low · 15 high
AU1
numeric
71
0
0 – 0.0671mean 0.0104
Min.
0
1st Qu.
0.0031
Median
0.0074
Mean
0.0104
3rd Qu.
0.0157
Max.
0.0671
Std. dev
0.0116
Skewness
2.377
Kurtosis
7.836
Zeros
11
Outliers
30 low · 3 high
AU2
numeric
78
0
0 – 0.0344mean 0.0104
Min.
0
1st Qu.
0.0058
Median
0.0092
Mean
0.0104
3rd Qu.
0.0133
Max.
0.0344
Std. dev
0.0069
Skewness
0.9467
Kurtosis
0.6452
Zeros
1
Outliers
40 low · 4 high
Same structure in 2 other datasets

These datasets share the same columns and types but hold different data.

YAPSAcutoffCosmicArtif_abs_dfYAPSAcutoffCosmicArtif_rel_df
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2896 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.222025-11-2896 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.212025-04-1596 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.202024-10-2996 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.192024-04-3096 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.182023-10-2496 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.172023-09-2596 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.162022-11-0196 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.152022-04-2696 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.142021-11-2996 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.132021-05-1996 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.122020-10-2796 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.112020-04-2796 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.102019-10-2996 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.92019-05-0296 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.82018-10-3096 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.72018-04-3096 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.62017-10-3096 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.52017-04-2496 × 35Unchangedrda · xz
version 2 · 19 KB
exact
3.42016-10-1796 × 35–rda · xz
version 2 · 19 KB
exact

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