count_data

Example RNA-seq count matrix shipped with VISTA

Bundled with VISTA · exported, loads via data()

Class

tibble

tbl_df/tbl/data.frame

Dimensions

63,677 × 9

Missing

Format

rda · bzip2

version 3 · 451 KB

File

data/count_data.rda

Fingerprint

74436edb

Format documented

Yes

Source

Derived from the `airway` Bioconductor dataset.

About this object

A tibble: a data.frame that prints compactly, never converts strings to factors, never adds row names, and can hold list columns. R object catalogue

Columns

Column

Type

Distinct

Missing

Summary

gene_id

character

63,677

15 characters

SRR1039508

integer

3,390

0 – 297906mean 324.1

Min.

1st Qu.

Median

Mean

324.104

3rd Qu.

Max.

297906

Std. dev

3478.04

Skewness

48.73

Kurtosis

3123

Zeros

39,044

Outliers

13,8940 low · 13894 high

SRR1039509

integer

3,269

0 – 255662mean 295.4

Min.

1st Qu.

Median

Mean

295.389

3rd Qu.

Max.

255662

Std. dev

2939.96

Skewness

45.06

Kurtosis

2849

Zeros

39,150

Outliers

13,7900 low · 13790 high

SRR1039512

integer

3,649

0 – 513766mean 398.1

Min.

1st Qu.

Median

Mean

398.082

3rd Qu.

Max.

513766

Std. dev

4832.65

Skewness

56.09

Kurtosis

4285

Zeros

37,978

Outliers

13,9820 low · 13982 high

SRR1039513

integer

2,841

0 – 273878mean 238.1

Min.

1st Qu.

Median

Mean

238.13

3rd Qu.

Max.

273878

Std. dev

2675.21

Skewness

50.15

Kurtosis

3534

Zeros

40,553

Outliers

14,0480 low · 14048 high

SRR1039516

integer

3,635

0 – 397791mean 383.9

Min.

1st Qu.

Median

Mean

383.944

3rd Qu.

Max.

397791

Std. dev

4447.15

Skewness

49.85

Kurtosis

3180

Zeros

38,169

Outliers

13,9480 low · 13948 high

SRR1039517

integer

4,109

0 – 401539mean 484

Min.

1st Qu.

Median

Mean

483.977

3rd Qu.

Max.

401539

Std. dev

5165.77

Skewness

43.91

Kurtosis

2526

Zeros

37,679

Outliers

13,9320 low · 13932 high

SRR1039520

integer

3,223

0 – 378834mean 300.4

Min.

1st Qu.

Median

Mean

300.362

3rd Qu.

Max.

378834

Std. dev

3608.14

Skewness

58.46

Kurtosis

4633

Zeros

39,015

Outliers

14,0500 low · 14050 high

SRR1039521

integer

3,413

0 – 372489mean 332.4

Min.

1st Qu.

Median

Mean

332.367

3rd Qu.

Max.

372489

Std. dev

3702.78

Skewness

54.05

Kurtosis

4192

Zeros

39,686

Outliers

13,9220 low · 13922 high