phylo_tree
Species tree from STRING-db v11
Bundled with TreeAndLeaf · exported, loads via data()
Class
phylo
Elements
3
Missing
0
Format
rda · gzip
version 3 · 41 KB
File
data/phylo_tree.RData
Fingerprint
4412aa4d
Format documented
Yes
Source
Source not stated
About this object
A phylogenetic tree. Topology is in an edge matrix of parent-child pairs, with branch lengths, tip labels, and an edge-ordering attribute. R object catalogue
Structure
Distinct
3
Element length
1 – 13,048
Total length
18,139
Elements
Element
Type
Distinct
Missing
Summary
edgeinteger6,52501 – 6525·6,524 × 2 matrixmean 4500
Min.
1
1st Qu.
3262.75
Median
5325.5
Mean
4500.08
3rd Qu.
5830
Max.
6525
Std. dev
1838.12
Skewness
-1.016
Kurtosis
-0.3121
Nnode
integer
1
0
1435
tip.label
character
5,090
0
3 – 7 characters
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| order | character | 1 | cladewise |
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.22 | 2026-02-20 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.21 | 2025-04-15 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.20 | 2024-10-29 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.19 | 2024-04-30 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.18 | 2023-10-24 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.17 | 2023-04-25 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.16 | 2022-11-01 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.15 | 2022-04-26 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.14 | 2021-10-27 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.13 | 2021-08-28 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.12 | 2020-10-27 | 3 elements | Unchanged | rda · gzip version 3 · 41 KB | exact |
| 3.11 | 2020-04-27 | 3 elements | – | rda · gzip version 3 · 41 KB | exact |