rao_chr20_25_rep
Contact matrix from Rao 2014, chromosome 20, 25kb resolution
Bundled with SpectralTAD · exported, loads via data()
Class
data.frame
Dimensions
2,125,980 × 3
Missing
0
Format
rda · bzip2
version 2 · 1.2 MB
File
data/rao_chr20_25_rep.rda
Fingerprint
822cf0c6
Format documented
Yes
Source
Data from Rao SS, Huntley MH, Durand NC, Stamenova EK et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 2014 Dec 18;159(7):1665-80. PMID: 25497547. Available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
integer2,385050000 – 62950000mean 2.223e+7
Min.
50000
1st Qu.
8225000
Median
19100000
Mean
2.22334e+7
3rd Qu.
35500000
Max.
62950000
Std. dev
1.59923e+7
Skewness
0.4625
Kurtosis
-0.9226
integer2,385050000 – 62950000mean 4.128e+7
Min.
50000
1st Qu.
30800000
Median
44525000
Mean
4.12775e+7
3rd Qu.
54625000
Max.
62950000
Std. dev
1.57142e+7
Skewness
-0.6039
Kurtosis
-0.7149
integer3,49301 – 7878mean 14.1
Min.
1
1st Qu.
1
Median
2
Mean
14.0988
3rd Qu.
5
Max.
7878
Std. dev
149.535
Skewness
27.87
Kurtosis
893
Outliers
195,5650 low · 195565 high
Same structure in 1 other dataset
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-08-20 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.22 | 2025-10-29 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.21 | 2025-04-15 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.20 | 2024-10-29 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.19 | 2024-04-30 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.18 | 2023-10-24 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.17 | 2023-07-04 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.16 | 2023-03-13 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.15 | 2022-04-26 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.14 | 2021-10-26 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.13 | 2021-05-19 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.12 | 2020-10-27 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.11 | 2020-04-27 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.10 | 2019-10-29 | 2,125,980 × 3 | Unchanged | rda · bzip2 version 2 · 1.2 MB | exact |
| 3.9 | 2019-05-02 | 2,125,980 × 3 | – | rda · bzip2 version 2 · 1.2 MB | exact |