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S01_exprMat_file

Bundled with SpaceTrooper · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
1,793 × 71
Missing
0
Format
csv · none
755 KB
File
inst/extdata/S01_prot/S01_exprMat_file.csv.gz
Fingerprint
f772bb81
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
fov
integer
1
0
344
cell_ID
integer
1,793
0
1 – 1793mean 897
Min.
1
1st Qu.
449
Median
897
Mean
897
3rd Qu.
1345
Max.
1793
Std. dev
517.739
Skewness
-2.675e-17
Kurtosis
-1.202
Order
ascending
X4.1BB
numeric
1,592
0
18.22 – 312.9mean 58.1
Min.
18.22
1st Qu.
32
Median
48.2
Mean
58.0954
3rd Qu.
72.44
Max.
312.9
Std. dev
36.213
Skewness
2.445
Kurtosis
9.813
Outliers
650 low · 65 high
B7.H3
numeric
1,648
0
0.65 – 279.46mean 51
Min.
0.65
1st Qu.
27.57
Median
43.57
Mean
50.9986
3rd Qu.
69.47
Max.
279.46
Std. dev
33.4452
Skewness
1.141
Kurtosis
2.209
Outliers
360 low · 36 high
Bcl.2
numeric
1,467
0
8.04 – 802.21mean 34.32
Min.
8.04
1st Qu.
17.92
Median
25.2
Mean
34.3202
3rd Qu.
38.28
Max.
802.21
Std. dev
34.5405
Skewness
8.513
Kurtosis
146.5
Outliers
1400 low · 140 high
Beta.catenin
numeric
1,665
0
18.76 – 393.22mean 82.3
Min.
18.76
1st Qu.
46.03
Median
64.48
Mean
82.2991
3rd Qu.
99.59
Max.
393.22
Std. dev
52.0553
Skewness
1.668
Kurtosis
2.985
Outliers
1180 low · 118 high
CCR7
numeric
1,036
0
4.95 – 132.86mean 14.57
Min.
4.95
1st Qu.
10.94
Median
13.08
Mean
14.5699
3rd Qu.
15.77
Max.
132.86
Std. dev
8.4862
Skewness
6.619
Kurtosis
64.67
Outliers
920 low · 92 high
CD11b
numeric
1,333
0
4.86 – 141.45mean 19.9
Min.
4.86
1st Qu.
12.87
Median
17.56
Mean
19.902
3rd Qu.
23.18
Max.
141.45
Std. dev
11.5345
Skewness
3.124
Kurtosis
18.71
Outliers
990 low · 99 high
CD11c
numeric
1,288
0
2.1 – 397.74mean 20.78
Min.
2.1
1st Qu.
8.37
Median
11.74
Mean
20.7829
3rd Qu.
19.01
Max.
397.74
Std. dev
28.8837
Skewness
5.115
Kurtosis
38.88
Outliers
2260 low · 226 high
CD123
numeric
1,158
0
10.36 – 199.48mean 24.09
Min.
10.36
1st Qu.
18.98
Median
22.03
Mean
24.0907
3rd Qu.
25.62
Max.
199.48
Std. dev
12.0701
Skewness
6.399
Kurtosis
58.98
Outliers
830 low · 83 high
CD127
numeric
1,732
0
5.01 – 1380.5mean 145.3
Min.
5.01
1st Qu.
76.75
Median
114.46
Mean
145.308
3rd Qu.
178.61
Max.
1380.5
Std. dev
118.897
Skewness
3.347
Kurtosis
19.33
Outliers
1010 low · 101 high
CD138
numeric
1,606
0
23.17 – 540.39mean 86.53
Min.
23.17
1st Qu.
46.32
Median
58.72
Mean
86.5282
3rd Qu.
102.54
Max.
540.39
Std. dev
61.4429
Skewness
1.783
Kurtosis
3.416
Outliers
1790 low · 179 high
CD14
numeric
1,496
0
4.3 – 209.13mean 29.14
Min.
4.3
1st Qu.
12.18
Median
22.28
Mean
29.138
3rd Qu.
39.19
Max.
209.13
Std. dev
22.6916
Skewness
2.073
Kurtosis
7.266
Outliers
560 low · 56 high
CD15
numeric
1,061
0
5.03 – 680.95mean 18.48
Min.
5.03
1st Qu.
11.01
Median
12.92
Mean
18.4776
3rd Qu.
16
Max.
680.95
Std. dev
28.2277
Skewness
11.92
Kurtosis
212.5
Outliers
1770 low · 177 high
CD16
numeric
950
0
0.35 – 388.78mean 8.289
Min.
0.35
1st Qu.
3.88
Median
5.36
Mean
8.2891
3rd Qu.
8.27
Max.
388.78
Std. dev
15.637
Skewness
15.79
Kurtosis
342.6
Outliers
1630 low · 163 high
CD163
numeric
1,178
0
1.07 – 238.4mean 14.57
Min.
1.07
1st Qu.
8.08
Median
10.79
Mean
14.5738
3rd Qu.
15.47
Max.
238.4
Std. dev
15.5964
Skewness
6.169
Kurtosis
55.38
Outliers
1300 low · 130 high
CD19
numeric
1,661
0
5.73 – 436.37mean 94.05
Min.
5.73
1st Qu.
23.35
Median
79.16
Mean
94.0533
3rd Qu.
143.35
Max.
436.37
Std. dev
78.8094
Skewness
0.9355
Kurtosis
0.3315
Outliers
170 low · 17 high
CD20
numeric
1,691
0
0.08 – 2647.8mean 436.8
Min.
0.08
1st Qu.
9.97
Median
368.83
Mean
436.784
3rd Qu.
723.09
Max.
2647.8
Std. dev
443.263
Skewness
0.9369
Kurtosis
0.5023
Outliers
140 low · 14 high
CD27
numeric
1,735
0
11.76 – 1383.79mean 154.7
Min.
11.76
1st Qu.
66.8
Median
127.8
Mean
154.696
3rd Qu.
205.73
Max.
1383.79
Std. dev
126.339
Skewness
2.378
Kurtosis
10.79
Outliers
780 low · 78 high
CD3
numeric
1,632
0
4.19 – 594.47mean 58.36
Min.
4.19
1st Qu.
21.88
Median
36.1
Mean
58.3552
3rd Qu.
72.69
Max.
594.47
Std. dev
60.6264
Skewness
2.97
Kurtosis
13.74
Outliers
1350 low · 135 high
CD31
numeric
1,311
0
0.39 – 851.19mean 22.78
Min.
0.39
1st Qu.
7.8
Median
11.76
Mean
22.7818
3rd Qu.
19.31
Max.
851.19
Std. dev
48.6179
Skewness
8.734
Kurtosis
102.2
Outliers
1750 low · 175 high
CD34
numeric
1,439
0
20.53 – 1293.09mean 53.9
Min.
20.53
1st Qu.
37.29
Median
43.32
Mean
53.9045
3rd Qu.
50.48
Max.
1293.09
Std. dev
63.3837
Skewness
10.76
Kurtosis
160.5
Outliers
1470 low · 147 high
CD38
numeric
1,731
0
14.52 – 1432.74mean 157.7
Min.
14.52
1st Qu.
52.6
Median
131.37
Mean
157.703
3rd Qu.
205.09
Max.
1432.74
Std. dev
146.461
Skewness
2.743
Kurtosis
12.73
Outliers
840 low · 84 high
CD39
numeric
1,673
0
5.45 – 1506.97mean 92.65
Min.
5.45
1st Qu.
40.57
Median
64.27
Mean
92.6546
3rd Qu.
108.77
Max.
1506.97
Std. dev
101.408
Skewness
5.581
Kurtosis
53.05
Outliers
1210 low · 121 high
CD4
numeric
1,756
0
24.52 – 1993.9mean 250.8
Min.
24.52
1st Qu.
115.79
Median
193.41
Mean
250.823
3rd Qu.
311.3
Max.
1993.9
Std. dev
210.68
Skewness
2.491
Kurtosis
9.563
Outliers
1050 low · 105 high
CD40
numeric
1,675
0
10.24 – 424.67mean 96.39
Min.
10.24
1st Qu.
32.84
Median
73.16
Mean
96.3886
3rd Qu.
145.38
Max.
424.67
Std. dev
75.1358
Skewness
1.016
Kurtosis
0.5503
Outliers
170 low · 17 high
CD45
numeric
1,777
0
5.76 – 3973.62mean 668.5
Min.
5.76
1st Qu.
197.65
Median
534.16
Mean
668.54
3rd Qu.
893.64
Max.
3973.62
Std. dev
609.133
Skewness
1.51
Kurtosis
2.65
Outliers
850 low · 85 high
CD45RA
numeric
1,726
0
12.15 – 389.7mean 115.3
Min.
12.15
1st Qu.
43.63
Median
101.73
Mean
115.324
3rd Qu.
170.7
Max.
389.7
Std. dev
79.8682
Skewness
0.7109
Kurtosis
-0.3055
Outliers
60 low · 6 high
CD56
numeric
1,154
0
8.16 – 171.6mean 21.71
Min.
8.16
1st Qu.
16.56
Median
19.42
Mean
21.7118
3rd Qu.
23.16
Max.
171.6
Std. dev
11.9713
Skewness
5.808
Kurtosis
47.08
Outliers
960 low · 96 high
CD68
numeric
1,460
0
0.74 – 1860.4mean 36.55
Min.
0.74
1st Qu.
13.68
Median
18.83
Mean
36.5507
3rd Qu.
28.18
Max.
1860.4
Std. dev
83.0582
Skewness
10.15
Kurtosis
159.1
Outliers
2170 low · 217 high
CD8
numeric
1,586
0
18.28 – 2800.77mean 104.8
Min.
18.28
1st Qu.
46.2
Median
55.52
Mean
104.781
3rd Qu.
82.08
Max.
2800.77
Std. dev
156.641
Skewness
6.078
Kurtosis
63.97
Outliers
2940 low · 294 high
CTLA4
numeric
1,567
0
21.97 – 618.59mean 61.91
Min.
21.97
1st Qu.
42.98
Median
54.35
Mean
61.9103
3rd Qu.
67.23
Max.
618.59
Std. dev
37.5679
Skewness
5.273
Kurtosis
49.72
Outliers
1380 low · 138 high
Channel.CD45
numeric
1,784
0
269.75 – 6537.29mean 1290
Min.
269.75
1st Qu.
503.15
Median
1183.88
Mean
1290.27
3rd Qu.
1759.56
Max.
6537.29
Std. dev
856.274
Skewness
1.085
Kurtosis
1.347
Outliers
240 low · 24 high
Channel.CD68
numeric
1,738
0
188.44 – 4224.51mean 486.7
Min.
188.44
1st Qu.
395.68
Median
445.64
Mean
486.689
3rd Qu.
500.34
Max.
4224.51
Std. dev
237.047
Skewness
7.15
Kurtosis
78.66
Outliers
1809 low · 171 high
Channel.DNA
numeric
1,789
0
154.4 – 7072.46mean 2702
Min.
154.4
1st Qu.
1635.67
Median
2787.78
Mean
2702.18
3rd Qu.
3714.42
Max.
7072.46
Std. dev
1208.47
Skewness
-0.0232
Kurtosis
-1.081
Outliers
10 low · 1 high
Channel.Membrane
numeric
1,783
0
223.82 – 5095.4mean 1566
Min.
223.82
1st Qu.
1002.22
Median
1465.61
Mean
1566.12
3rd Qu.
1979.82
Max.
5095.4
Std. dev
770.413
Skewness
0.8425
Kurtosis
0.749
Outliers
320 low · 32 high
Channel.PanCK
numeric
1,775
0
330.09 – 4974mean 1277
Min.
330.09
1st Qu.
887.55
Median
995.43
Mean
1276.61
3rd Qu.
1441.97
Max.
4974
Std. dev
697.245
Skewness
1.87
Kurtosis
3.536
Outliers
1770 low · 177 high
EGFR
numeric
1,624
0
8.95 – 368.33mean 66.64
Min.
8.95
1st Qu.
35.62
Median
49.41
Mean
66.6376
3rd Qu.
72.91
Max.
368.33
Std. dev
51.3322
Skewness
1.932
Kurtosis
3.901
Outliers
2370 low · 237 high
EpCAM
numeric
1,061
0
3.51 – 144.58mean 14.39
Min.
3.51
1st Qu.
8.62
Median
10.43
Mean
14.3915
3rd Qu.
13.88
Max.
144.58
Std. dev
12.1278
Skewness
3.953
Kurtosis
23.37
Outliers
2480 low · 248 high
FABP4
numeric
1,517
0
10.55 – 186.79mean 39.27
Min.
10.55
1st Qu.
25.81
Median
35.1
Mean
39.2714
3rd Qu.
45.1
Max.
186.79
Std. dev
20.0531
Skewness
2.001
Kurtosis
6.589
Outliers
1280 low · 128 high
FOXP3
numeric
1,123
0
8.25 – 171.01mean 20.42
Min.
8.25
1st Qu.
15.7
Median
18.47
Mean
20.4188
3rd Qu.
22.17
Max.
171.01
Std. dev
10.9294
Skewness
6.796
Kurtosis
65.92
Outliers
740 low · 74 high
Fibronectin
numeric
1,656
0
19.74 – 6203.39mean 502.8
Min.
19.74
1st Qu.
52.58
Median
75.14
Mean
502.811
3rd Qu.
286.62
Max.
6203.39
Std. dev
983.021
Skewness
2.66
Kurtosis
7.019
Outliers
3400 low · 340 high
GITR
numeric
1,529
0
26.17 – 365.76mean 56.93
Min.
26.17
1st Qu.
43.88
Median
53.45
Mean
56.9278
3rd Qu.
62.97
Max.
365.76
Std. dev
25.0218
Skewness
4.909
Kurtosis
39.32
Outliers
810 low · 81 high
GZMA
numeric
1,435
0
14.38 – 587.13mean 43.63
Min.
14.38
1st Qu.
29.18
Median
35.24
Mean
43.6295
3rd Qu.
42.59
Max.
587.13
Std. dev
39.3951
Skewness
6.904
Kurtosis
66.89
Outliers
1680 low · 168 high
GZMB
numeric
1,133
0
7.72 – 169.17mean 22.4
Min.
7.72
1st Qu.
17.79
Median
20.55
Mean
22.396
3rd Qu.
23.85
Max.
169.17
Std. dev
10.7824
Skewness
6.061
Kurtosis
54.72
Outliers
964 low · 92 high
HLA.DR
numeric
1,685
0
5.04 – 1216.15mean 156.6
Min.
5.04
1st Qu.
23.75
Median
96.09
Mean
156.603
3rd Qu.
232.81
Max.
1216.15
Std. dev
170.226
Skewness
1.761
Kurtosis
4.079
Outliers
700 low · 70 high
Her2
numeric
1,197
0
0.14 – 223.07mean 12.9
Min.
0.14
1st Qu.
5.49
Median
8.2
Mean
12.8975
3rd Qu.
14.04
Max.
223.07
Std. dev
15.3123
Skewness
5.371
Kurtosis
46.78
Outliers
2040 low · 204 high
ICAM1
numeric
1,667
0
3.06 – 375.95mean 68.84
Min.
3.06
1st Qu.
33.69
Median
57.72
Mean
68.8386
3rd Qu.
93.53
Max.
375.95
Std. dev
46.6999
Skewness
1.442
Kurtosis
3.276
Outliers
470 low · 47 high
ICOS
numeric
1,606
0
12.29 – 740.74mean 64.5
Min.
12.29
1st Qu.
22.84
Median
40.63
Mean
64.4955
3rd Qu.
73.14
Max.
740.74
Std. dev
69.5338
Skewness
3.206
Kurtosis
15.71
Outliers
1700 low · 170 high
IDO1
numeric
1,447
0
11.33 – 364.32mean 37.23
Min.
11.33
1st Qu.
23.22
Median
29.2
Mean
37.2326
3rd Qu.
39.74
Max.
364.32
Std. dev
29.1205
Skewness
4.832
Kurtosis
34.16
Outliers
1560 low · 156 high
IL.18
numeric
1,509
0
10.57 – 427.25mean 41.96
Min.
10.57
1st Qu.
25.88
Median
34.16
Mean
41.9564
3rd Qu.
43.47
Max.
427.25
Std. dev
34.4946
Skewness
4.556
Kurtosis
30.32
Outliers
1790 low · 179 high
IL.1b
numeric
1,384
0
20.03 – 337.01mean 41.35
Min.
20.03
1st Qu.
31.62
Median
37.79
Mean
41.3498
3rd Qu.
45.26
Max.
337.01
Std. dev
21.1373
Skewness
6.959
Kurtosis
69.24
Outliers
620 low · 62 high
IgD
numeric
1,184
0
1.5 – 2058.67mean 19.48
Min.
1.5
1st Qu.
6.71
Median
9.5
Mean
19.4769
3rd Qu.
13.82
Max.
2058.67
Std. dev
77.7791
Skewness
16.22
Kurtosis
333.7
Outliers
1770 low · 177 high
Ki.67
numeric
1,674
0
17.88 – 1307.08mean 100.8
Min.
17.88
1st Qu.
33.21
Median
67
Mean
100.812
3rd Qu.
129.8
Max.
1307.08
Std. dev
100.145
Skewness
3.283
Kurtosis
20.76
Outliers
1050 low · 105 high
LAG3
numeric
1,394
0
20.4 – 499.15mean 45.47
Min.
20.4
1st Qu.
34.75
Median
41.1
Mean
45.472
3rd Qu.
48.5
Max.
499.15
Std. dev
26.7626
Skewness
7.638
Kurtosis
84.7
Outliers
830 low · 83 high
LAMP1
numeric
1,725
0
6 – 2503.32mean 182
Min.
6
1st Qu.
92.37
Median
137.36
Mean
181.972
3rd Qu.
218.73
Max.
2503.32
Std. dev
166.703
Skewness
4.915
Kurtosis
44.22
Outliers
1220 low · 122 high
NF.kB.p65
numeric
1,774
0
20.4 – 1903.86mean 469.8
Min.
20.4
1st Qu.
255.53
Median
389.55
Mean
469.797
3rd Qu.
581.26
Max.
1903.86
Std. dev
322.121
Skewness
1.389
Kurtosis
1.981
Outliers
1270 low · 127 high
PD.1
numeric
1,515
0
3.86 – 284.29mean 39.33
Min.
3.86
1st Qu.
13.84
Median
23.1
Mean
39.3324
3rd Qu.
46.02
Max.
284.29
Std. dev
42.2335
Skewness
2.48
Kurtosis
7.103
Outliers
1790 low · 179 high
PD.L1
numeric
1,677
0
14.06 – 333.56mean 78.93
Min.
14.06
1st Qu.
46.32
Median
68.82
Mean
78.9255
3rd Qu.
98.93
Max.
333.56
Std. dev
47.1377
Skewness
1.715
Kurtosis
4.335
Outliers
810 low · 81 high
PD.L2
numeric
1,663
0
27.44 – 685.66mean 103.4
Min.
27.44
1st Qu.
52.29
Median
86.81
Mean
103.386
3rd Qu.
127.78
Max.
685.66
Std. dev
69.0842
Skewness
2.218
Kurtosis
7.799
Outliers
890 low · 89 high
SMA
numeric
1,717
0
12.83 – 1439.12mean 122.6
Min.
12.83
1st Qu.
62.61
Median
93.16
Mean
122.638
3rd Qu.
133.6
Max.
1439.12
Std. dev
116.35
Skewness
4.35
Kurtosis
29.76
Outliers
1600 low · 160 high
STING
numeric
1,723
0
0.47 – 757.45mean 104.2
Min.
0.47
1st Qu.
34.73
Median
83.12
Mean
104.181
3rd Qu.
141.26
Max.
757.45
Std. dev
93.9206
Skewness
1.967
Kurtosis
6.323
Outliers
810 low · 81 high
TCF7
numeric
1,062
0
3.63 – 116.2mean 13.28
Min.
3.63
1st Qu.
8.98
Median
11.21
Mean
13.2812
3rd Qu.
14.25
Max.
116.2
Std. dev
9.557
Skewness
4.982
Kurtosis
34.75
Outliers
1180 low · 118 high
Tim.3
numeric
1,695
0
35.25 – 611.66mean 138.2
Min.
35.25
1st Qu.
71.85
Median
107.42
Mean
138.21
3rd Qu.
184.66
Max.
611.66
Std. dev
84.9814
Skewness
1.426
Kurtosis
2.274
Outliers
420 low · 42 high
VISTA
numeric
1,459
0
6.22 – 203.63mean 30.33
Min.
6.22
1st Qu.
20.27
Median
27.09
Mean
30.3296
3rd Qu.
35.95
Max.
203.63
Std. dev
16.8582
Skewness
3.374
Kurtosis
19.96
Outliers
720 low · 72 high
Vimentin
numeric
1,779
0
0.3 – 9779.47mean 901.9
Min.
0.3
1st Qu.
171.88
Median
561.22
Mean
901.901
3rd Qu.
1177.7
Max.
9779.47
Std. dev
1128.3
Skewness
2.838
Kurtosis
11.56
Outliers
1170 low · 117 high
iNOS
numeric
1,231
0
1.77 – 276.27mean 17.99
Min.
1.77
1st Qu.
11.83
Median
15.65
Mean
17.9858
3rd Qu.
20.16
Max.
276.27
Std. dev
15.6615
Skewness
8.364
Kurtosis
96.95
Outliers
660 low · 66 high
p53
numeric
1,463
0
20.22 – 324.13mean 49.01
Min.
20.22
1st Qu.
38.02
Median
46.93
Mean
49.0149
3rd Qu.
54.79
Max.
324.13
Std. dev
20.2224
Skewness
5.465
Kurtosis
51.1
Outliers
520 low · 52 high
pan.RAS
numeric
1,715
0
19.62 – 423.32mean 127.9
Min.
19.62
1st Qu.
90.02
Median
127.11
Mean
127.876
3rd Qu.
161.67
Max.
423.32
Std. dev
52.1524
Skewness
0.4436
Kurtosis
0.6024
Outliers
170 low · 17 high
Ms.IgG1
numeric
788
0
1.55 – 113.28mean 7.927
Min.
1.55
1st Qu.
5.54
Median
6.77
Mean
7.9274
3rd Qu.
8.4
Max.
113.28
Std. dev
6.6857
Skewness
8.205
Kurtosis
90
Outliers
930 low · 93 high
Rb.IgG
numeric
1,406
0
21.88 – 388.24mean 44.43
Min.
21.88
1st Qu.
34.06
Median
40.11
Mean
44.4347
3rd Qu.
48.55
Max.
388.24
Std. dev
23.203
Skewness
7.177
Kurtosis
74.25
Outliers
660 low · 66 high
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,793 × 71Data changed
Dimensions 1,491 × 71 → 1,793 × 71
csv · none
755 KB
degraded
3.222025-12-121,491 × 71–csv · none
593 KB
degraded

Dimensions is the row and column count.

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