Skip to content

rawcount

An example of RNASeq counts data

Bundled with RNAAgeCalc · exported, loads via data()

Class
matrix
Dimensions
24,989 × 2
Missing
0
Format
rda · xz
version 2 · 161 KB
File
data/countExample.RData
Fingerprint
c5a1dcc3
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
49,978
Missing
0
Min.
0
1st Qu.
2
Median
120
Mean
1155.6
3rd Qu.
1104
Max.
123976
Std. dev
3084.21
Distinct
6,595
Skewness
9.626
Kurtosis
187.8
Whole numbers
Yes
Zeros
9,057 18.1%
Outliers
5,733 0 low · 5733 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows02.51221155.61114.51233523067.2
Columns1145.71150.71155.61155.61160.51165.513.933

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsAFF4, ZGLP1, CHDH, MIR6801, ZFP90, KDM6B, DCLRE1A, SPINK2, NSUN5P2, P2RY14, SC5D, DSN1, …24,989
ColumnsSRR2166176, SRR21676422
Columns

This object is 2 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

30 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 2 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2824,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.222025-10-2924,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.212025-04-1524,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.202024-10-2924,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.192024-04-3024,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.182023-10-2424,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.172023-04-2524,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.162022-11-0124,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.152022-04-2624,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.142021-10-2624,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.132021-05-1924,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.122020-10-2724,989 × 2Unchangedrda · xz
version 2 · 161 KB
exact
3.112020-09-2024,989 × 2–rda · xz
version 2 · 161 KB
exact

Privacy choices

These apply to this browser and are stored on this device only. Nothing about your choice is sent to us.

Read the privacy policy