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mds

MDS gene expression profile

Bundled with Pigengene · exported, loads via data()

Class
matrix
Dimensions
164 × 1,000
Missing
0
Format
rda · xz
version 2 · 378 KB
File
data/mds.RData
Fingerprint
8f76f317
Format documented
Yes
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15061
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
164,000
Missing
0
Min.
0
1st Qu.
0.412097
Median
0.515909
Mean
0.516729
3rd Qu.
0.624932
Max.
0.97033
Std. dev
0.157835
Distinct
31,980
Skewness
-0.1344
Kurtosis
-0.06516
Zeros
5 0.003%
Outliers
1,196 1181 low · 15 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows0.463510.51140.51850.516730.526740.535820.012934
Columns0.0907910.421170.513350.516730.609590.897160.14254

The column means vary far more than the row means, so what separates the values runs across the columns.

Dimensions and labels
MarginLabelsCount
RowsGSM376264, GSM376265, GSM376266, GSM376267, GSM376268, GSM376269, GSM376270, GSM376271, GSM376272, GSM376273, GSM376274, GSM376275, …164
Columns7180_at, 272_at, 2769_at, 4267_at, 79183_at, 25801_at, 23345_at, 10562_at, 11221_at, 154664_at, 10321_at, 10625_at, …1,000
Columns

This object is 1,000 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

7 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 1,000 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-28164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.222025-10-29164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.212025-04-15164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.202024-10-29164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.192024-04-30164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.182023-10-24164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.172023-04-25164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.162022-11-01164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.152022-04-26164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.142021-10-26164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.132021-09-27164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.122020-10-27164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.112020-04-27164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.102019-10-29164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.92019-05-02164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.82019-01-04164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.72018-04-30164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.62018-03-18164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.52017-04-24164 × 1,000Unchangedrda · xz
version 2 · 378 KB
exact
3.42016-10-17164 × 1,000–rda · xz
version 2 · 378 KB
exact

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