simT2
Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
Bundled with OncoSimulR · exported, loads via data()
Class
oncosimul
oncosimul/oncosimul2
Elements
22
Missing
0
Format
rda · gzip
version 3 · 3.1 KB
File
data/simT2.RData
Fingerprint
319b9b8d
Format documented
Yes
Source
Source not stated
Structure
Distinct
14
Nesting depth
3
Element length
0 – 900
Total length
942
Nested rows
2
Nested columns
4
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
pops.by.timenumeric59500 – 13765·225 × 4 matrixmean 2763
Min.
0
1st Qu.
0
Median
108.725
Mean
2763.43
3rd Qu.
3913.75
Max.
13765
Std. dev
4521.03
Skewness
1.292
Kurtosis
-0.0377
Zeros
233
Outliers
1700 low · 170 high
NumClones
numeric
1
0
3
TotalPopSize
numeric
1
0
13519
Genotypesinteger200 – 1·2 × 3 matrixmean 0.3333
Min.
0
1st Qu.
0
Median
0
Mean
0.3333
3rd Qu.
0.75
Max.
1
Std. dev
0.5164
Skewness
0.5379
Kurtosis
-1.958
Zeros
4
GenotypesWDistinctOrderEfflist30integer
Element class
integer
Element length
0 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
0
0
0 values
[[2]]
integer
1
0
1
[[3]]
integer
1
0
2
GenotypesLabels
character
3
0
0 – 1 characters·1 blank
MaxNumDrivers
integer
1
0
0
MaxDriversLast
integer
1
0
0
NumDriversLargestPop
integer
1
0
0
LargestClone
numeric
1
0
13519
PropLargestPopLast
numeric
1
0
1
FinalTime
numeric
1
0
225
NumIter
integer
1
0
9049
HittedWallTime
logical
1
0
0 true·1 false
HittedMaxTries
logical
1
0
0 true·1 false
TotalPresentDrivers
integer
1
0
0
CountByDriver
integer
0
0
0 values
OccurringDrivers
character
1
0
0 characters·1 blank
otherlist110nested·2 rows nested·4 cols
Element length
0 – 8
Total length
27
Nesting depth
2
Nested rows
2
What is inside it
Element
Type
Distinct
Missing
Summary
attemptsUsed
integer
1
0
1
errorMF
numeric
1
0
0.018
errorMF_size
numeric
1
0
0.0211
minDMratio
numeric
1
0
15920.1
minBMratio
numeric
1
0
3302.67
PhylogDFlist20nested
Element length
0 – 0
Total length
0
UnrecoverExcept
logical
1
0
0 true·1 false
numRecoverExcept
integer
1
0
0
accum_ti_dbl_min
integer
1
0
0
accum_ti_e3
integer
1
0
0
LOD_DFlist20character
Element class
character
Element length
2 – 2
Total length
4
interventionTimes
numeric
0
0
0 values
userVarNames
character
4
0
8 – 9 characters
POM
character
2
0
0 – 1 characters·2 blank
Drivers
integer
0
0
0 values
geneNames
character
2
0
1 characters
InitMutant
character
1
0
0 characters·1 blank
The nested tables do not share one set of columns, so there is no single schema to show.
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | |
|---|---|---|---|
| call | object | 0 |
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.22 | 2025-10-29 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.21 | 2025-04-15 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.20 | 2024-10-29 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.19 | 2024-10-09 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.18 | 2023-10-24 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.17 | 2023-04-25 | 22 elements | Unchanged | rda · gzip version 3 · 3.1 KB | exact |
| 3.16 | 2023-02-20 | 22 elements | – | rda · gzip version 3 · 3.1 KB | exact |