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benchmark_1_0.05

Summary results from some benchmarks reported in the vignette.

Bundled with OncoSimulR · exported, loads via data()

Class
data.frame
Dimensions
16 × 39
Missing
8
Format
rda · gzip
version 2 · 3.0 KB
File
data/benchmark_1_0.05.RData
Fingerprint
2df2bf2c
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Other attributes

Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.

AttributeHoldsLength
system_summarylist5
Columns
Column
Type
Distinct
Missing
Summary
NumClones.Min.
numeric
7
0
0 – 14mean 3.438
Min.
0
1st Qu.
1
Median
1
Mean
3.4375
3rd Qu.
7
Max.
14
Std. dev
4.2106
Skewness
1.099
Kurtosis
-0.052
Zeros
3
NumClones.1st.Qu.
numeric
7
0
0 – 29.75mean 6.859
Min.
0
1st Qu.
1
Median
1
Mean
6.8594
3rd Qu.
14.25
Max.
29.75
Std. dev
9.2745
Skewness
1.088
Kurtosis
-0.121
Zeros
3
NumClones.Median
numeric
9
0
0 – 34.5mean 7.969
Min.
0
1st Qu.
1
Median
2
Mean
7.9688
3rd Qu.
15.5
Max.
34.5
Std. dev
10.3642
Skewness
1.157
Kurtosis
0.1736
Zeros
3
NumClones.Mean
numeric
16
0
0.5 – 33.64mean 8.6
Min.
0.5
1st Qu.
1.0475
Median
3.06
Mean
8.6
3rd Qu.
15.6175
Max.
33.64
Std. dev
9.9731
Skewness
1.104
Kurtosis
0.0565
NumClones.3rd.Qu.
numeric
11
0
0 – 38mean 9.484
Min.
0
1st Qu.
1
Median
4
Mean
9.4844
3rd Qu.
18
Max.
38
Std. dev
11.5699
Skewness
1.085
Kurtosis
-0.0476
Zeros
2
NumClones.Max.
numeric
12
0
2 – 44mean 18.88
Min.
2
1st Qu.
5
Median
16.5
Mean
18.875
3rd Qu.
28
Max.
44
Std. dev
15.4526
Skewness
0.368
Kurtosis
-1.449
NumIter.Min.
numeric
15
0
21 – 367527mean 6.055e+4
Min.
21
1st Qu.
60.75
Median
288
Mean
60553.1
3rd Qu.
20692.5
Max.
367527
Std. dev
120609
Skewness
1.52
Kurtosis
0.6635
Outliers
40 low · 4 high
NumIter.1st.Qu.
numeric
16
0
163 – 1.25536e+6mean 2.827e+5
Min.
163
1st Qu.
249.125
Median
1258.12
Mean
282749
3rd Qu.
260433
Max.
1.25536e+6
Std. dev
501087
Skewness
1.087
Kurtosis
-0.8034
Outliers
40 low · 4 high
NumIter.Median
numeric
16
0
274 – 2102439mean 4.939e+5
Min.
274
1st Qu.
548
Median
2456
Mean
493918
3rd Qu.
455107
Max.
2102439
Std. dev
870685
Skewness
1.084
Kurtosis
-0.8182
Outliers
40 low · 4 high
NumIter.Mean
numeric
16
0
396.7 – 2.57381e+6mean 6.212e+5
Min.
396.7
1st Qu.
944.72
Median
6985.1
Mean
621198
3rd Qu.
648067
Max.
2.57381e+6
Std. dev
1.08369e+6
Skewness
1.052
Kurtosis
-0.9286
Outliers
40 low · 4 high
NumIter.3rd.Qu.
numeric
16
0
490.5 – 3.42878e+6mean 793530
Min.
490.5
1st Qu.
1264.69
Median
4025.62
Mean
793530
3rd Qu.
782022
Max.
3.42878e+6
Std. dev
1.3922e+6
Skewness
1.068
Kurtosis
-0.8715
Outliers
40 low · 4 high
NumIter.Max.
numeric
16
0
1700 – 14107689mean 2.744e+6
Min.
1700
1st Qu.
5763.5
Median
129010
Mean
2.74435e+6
3rd Qu.
2477058
Max.
14107689
Std. dev
4.8023e+6
Skewness
1.226
Kurtosis
-0.2224
Outliers
40 low · 4 high
FinalTime.Min.
numeric
13
0
21 – 9187.42mean 1617
Min.
21
1st Qu.
60.75
Median
204
Mean
1616.85
3rd Qu.
732.263
Max.
9187.42
Std. dev
2962.34
Skewness
1.528
Kurtosis
0.6971
Outliers
40 low · 4 high
FinalTime.1st.Qu.
numeric
16
0
162.75 – 31381.4mean 7515
Min.
162.75
1st Qu.
248.562
Median
849.875
Mean
7514.51
3rd Qu.
7508.48
Max.
31381.4
Std. dev
12273.9
Skewness
1.083
Kurtosis
-0.8026
Outliers
40 low · 4 high
FinalTime.Median
numeric
16
0
273 – 52556.4mean 1.313e+4
Min.
273
1st Qu.
541.25
Median
1706.5
Mean
13127.1
3rd Qu.
12551.1
Max.
52556.4
Std. dev
21321.9
Skewness
1.08
Kurtosis
-0.8177
Outliers
40 low · 4 high
FinalTime.Mean
numeric
16
0
394.8 – 64339.7mean 1.658e+4
Min.
394.8
1st Qu.
924.315
Median
2551.07
Mean
16578.1
3rd Qu.
17395.6
Max.
64339.7
Std. dev
26485.4
Skewness
1.048
Kurtosis
-0.9313
Outliers
40 low · 4 high
FinalTime.3rd.Qu.
numeric
16
0
488.25 – 85711.6mean 2.129e+4
Min.
488.25
1st Qu.
1190.69
Median
3132
Mean
21289
3rd Qu.
21475.9
Max.
85711.6
Std. dev
33972.1
Skewness
1.063
Kurtosis
-0.8725
Outliers
40 low · 4 high
FinalTime.Max.
numeric
16
0
1690 – 352662mean 7.267e+4
Min.
1690
1st Qu.
5671.5
Median
12369
Mean
72669.7
3rd Qu.
64889.6
Max.
352662
Std. dev
117715
Skewness
1.232
Kurtosis
-0.193
Outliers
40 low · 4 high
TotalPopSize.Min.
numeric
10
0
0 – 3609237mean 4.515e+5
Min.
0
1st Qu.
0
Median
601.5
Mean
451466
3rd Qu.
29221
Max.
3609237
Std. dev
1.18482e+6
Skewness
2.059
Kurtosis
2.425
Zeros
6
Outliers
40 low · 4 high
TotalPopSize.1st.Qu.
numeric
11
0
0 – 249104549mean 2.686e+7
Min.
0
1st Qu.
0
Median
626.875
Mean
2.68608e+7
3rd Qu.
426866
Max.
249104549
Std. dev
7.37965e+7
Skewness
2.188
Kurtosis
3.214
Zeros
6
Outliers
40 low · 4 high
TotalPopSize.Median
numeric
11
0
0 – 684637504mean 6.997e+7
Min.
0
1st Qu.
0
Median
644
Mean
6.99702e+7
3rd Qu.
950482
Max.
684637504
Std. dev
1.95342e+8
Skewness
2.288
Kurtosis
3.835
Zeros
6
Outliers
40 low · 4 high
TotalPopSize.Mean
numeric
16
0
521.68 – 1.03872e+9mean 1.382e+8
Min.
521.68
1st Qu.
649.673
Median
76129.2
Mean
1.38163e+8
3rd Qu.
3.1665e+7
Max.
1.03872e+9
Std. dev
3.26279e+8
Skewness
2.01
Kurtosis
2.371
Outliers
40 low · 4 high
TotalPopSize.3rd.Qu.
numeric
13
0
0 – 1.30042e+9mean 1.512e+8
Min.
0
1st Qu.
492.75
Median
847.625
Mean
1.51201e+8
3rd Qu.
1.76219e+6
Max.
1.30042e+9
Std. dev
4.1187e+8
Skewness
2.089
Kurtosis
2.595
Zeros
4
Outliers
40 low · 4 high
TotalPopSize.Max.
numeric
16
0
740 – 8176450692mean 1.523e+9
Min.
740
1st Qu.
1872.25
Median
3050553
Mean
1.52326e+9
3rd Qu.
9.52609e+8
Max.
8176450692
Std. dev
2.86051e+9
Skewness
1.342
Kurtosis
0.1091
Outliers
40 low · 4 high
Attempts.Min.
numeric
1
0
1
Attempts.1st.Qu.
numeric
4
0
1 – 3.75mean 1.484
Min.
1
1st Qu.
1
Median
1
Mean
1.4844
3rd Qu.
1.25
Max.
3.75
Std. dev
0.9241
Skewness
1.375
Kurtosis
0.2257
Outliers
40 low · 4 high
Attempts.Median
numeric
4
0
1 – 6.5mean 2.344
Min.
1
1st Qu.
1
Median
1
Mean
2.3438
3rd Qu.
3
Max.
6.5
Std. dev
2.271
Skewness
1.023
Kurtosis
-0.9547
Outliers
10 low · 1 high
Attempts.Mean
numeric
7
0
1 – 9.67mean 3.241
Min.
1
1st Qu.
1
Median
1
Mean
3.2412
3rd Qu.
4.05
Max.
9.67
Std. dev
3.6605
Skewness
1.013
Kurtosis
-0.9712
Outliers
40 low · 4 high
Attempts.3rd.Qu.
numeric
5
0
1 – 13mean 4.125
Min.
1
1st Qu.
1
Median
1
Mean
4.125
3rd Qu.
5.3125
Max.
13
Std. dev
5.0407
Skewness
1.001
Kurtosis
-0.9866
Outliers
40 low · 4 high
Attempts.Max.
numeric
7
0
1 – 50mean 13.06
Min.
1
1st Qu.
1
Median
1
Mean
13.0625
3rd Qu.
21
Max.
50
Std. dev
18.859
Skewness
1.013
Kurtosis
-0.7909
size
numeric
16
0
1256816 – 1136385192mean 1.559e+8
Min.
1256816
1st Qu.
1628192
Median
3179344
Mean
1.5594e+8
3rd Qu.
34324392
Max.
1136385192
Std. dev
3.80004e+8
Skewness
2.031
Kurtosis
2.328
Outliers
30 low · 3 high
time
numeric
16
0
0.105 – 171.005mean 45.36
Min.
0.105
1st Qu.
0.1632
Median
2.1915
Mean
45.3636
3rd Qu.
62.3035
Max.
171.005
Std. dev
71.8056
Skewness
1.007
Kurtosis
-0.9757
Outliers
40 low · 4 high
Numindiv
integer
1
0
100
time_per_simul
numeric
16
0
0.0011 – 1.71mean 0.4536
Min.
0.0011
1st Qu.
0.0016
Median
0.0219
Mean
0.4536
3rd Qu.
0.623
Max.
1.71
Std. dev
0.7181
Skewness
1.007
Kurtosis
-0.9757
Outliers
40 low · 4 high
size_mb_per_simul
numeric
16
0
0.012 – 10.8374mean 1.487
Min.
0.012
1st Qu.
0.0155
Median
0.0303
Mean
1.4872
3rd Qu.
0.3273
Max.
10.8374
Std. dev
3.624
Skewness
2.031
Kurtosis
2.328
Outliers
30 low · 3 high
keepEvery
numeric
1
8
1
PDBaseline
numeric
3
0
600 – 500000mean 137800
Min.
600
1st Qu.
600
Median
25300
Mean
137800
3rd Qu.
162500
Max.
500000
Std. dev
216976
Skewness
1.02
Kurtosis
-0.9721
Outliers
40 low · 4 high
n2
numeric
3
0
1000 – 50000000mean 12625500
Min.
1000
1st Qu.
1000
Median
250500
Mean
12625500
3rd Qu.
12875000
Max.
50000000
Std. dev
2.22868e+7
Skewness
1.048
Kurtosis
-0.9494
Outliers
40 low · 4 high
onlyCancer
logical
2
0
8 true·8 false
Same structure in 1 other dataset

These datasets share the same columns and types but hold different data.

OncoSimulRbenchmark_1
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2816 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.222025-10-2916 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.212025-04-1516 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.202024-10-2916 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.192024-10-0916 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.182023-10-2416 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.172023-04-2516 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.162023-02-2016 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.152022-04-2616 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.142021-10-2616 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.132021-05-1916 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.122020-10-2716 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.112020-04-2716 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.102020-04-1016 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.92019-05-0216 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.82018-10-3016 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.72018-04-3016 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.62017-10-3016 × 39Unchangedrda · gzip
version 2 · 3.0 KB
exact
3.52017-04-2416 × 39–rda · gzip
version 2 · 3.0 KB
exact

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