mf_data_6_sample

Bundled with MutSeqR · provided in inst/extdata, read by path with system.file()

Class

tibble

tbl_df/tbl/data.frame

Dimensions

264 × 11

Missing

Format

rds · gzip

version 3 · 8.4 KB

File

inst/extdata/Example_files/mf_data_6_sample.rds

Fingerprint

8838ca9d

About this object

A tibble: a data.frame that prints compactly, never converts strings to factors, never adds row names, and can hold list columns. R object catalogue

Columns

Column

Type

Distinct

Missing

Summary

normalized_subtype

factor

complex24deletion24insertion24mnv24sv24C>A24+6 more

Levels

Used

Unused

Rows per level, the 11 commonest of 12

complex24deletion24insertion24mnv24sv24C>A24C>G24C>T24T>A24T>C24T>G24

sample

character

10 characters

normalized_ref

character

1 characters

sum_min

numeric

0 – 452mean 31.77

Min.

1st Qu.

3.75

Median

10.5

Mean

31.7652

3rd Qu.

26.25

Max.

452

Std. dev

68.0525

Skewness

4.439

Kurtosis

21.43

Zeros

Outliers

340 low · 34 high

sum_max

integer

0 – 1673mean 67.89

Min.

1st Qu.

4.75

Median

Mean

67.8902

3rd Qu.

Max.

1673

Std. dev

191.576

Skewness

5.506

Kurtosis

33.71

Zeros

Outliers

380 low · 38 high

mf_min

numeric

236

0 – 1.3668e-6mean 9.816e-8

Min.

1st Qu.

6.3156e-9

Median

2.2688e-8

Mean

9.8163e-8

3rd Qu.

6.4617e-8

Max.

1.3668e-6

Std. dev

2.2521e-7

Skewness

4.006

Kurtosis

16.79

Zeros

Outliers

400 low · 40 high

mf_max

numeric

239

0 – 5.4119e-6mean 2.076e-7

Min.

1st Qu.

8.4248e-9

Median

3.1807e-8

Mean

2.0758e-7

3rd Qu.

9.6927e-8

Max.

5.4119e-6

Std. dev

6.0332e-7

Skewness

5.431

Kurtosis

34.15

Zeros

Outliers

420 low · 42 high

group_depth

numeric

172863681 – 884634013mean 6.523e+8

Min.

172863681

1st Qu.

6.32754e+8

Median

6.81318e+8

Mean

6.52336e+8

3rd Qu.

7.21117e+8

Max.

884634013

Std. dev

1.45093e+8

Skewness

-1.867

Kurtosis

3.82

Outliers

3322 low · 11 high

subtype_depth

numeric

78482517 – 884634013mean 4.744e+8

Min.

78482517

1st Qu.

314140963

Median

399018526

Mean

4.74426e+8

3rd Qu.

675082013

Max.

884634013

Std. dev

1.99281e+8

Skewness

0.1672

Kurtosis

-1.192

proportion_min

numeric

236

0 – 0.6535mean 0.0909

Min.

1st Qu.

0.0089

Median

0.0288

Mean

0.0909

3rd Qu.

0.1302

Max.

0.6535

Std. dev

0.1474

Skewness

2.449

Kurtosis

5.439

Zeros

Outliers

200 low · 20 high

proportion_max

numeric

239

0 – 0.672mean 0.0909

Min.

1st Qu.

0.0067

Median

0.0236

Mean

0.0909

3rd Qu.

0.1242

Max.

0.672

Std. dev

0.1558

Skewness

2.467

Kurtosis

5.377

Zeros

Outliers

220 low · 22 high