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AffyIlmn

cross mapping table

Bundled with Mulcom · exported, loads via data()

Class
data.frame
Dimensions
11,298 × 7
Missing
0
Format
rda · xz
version 2 · 1.0 MB
File
data/benchVign.rda
Fingerprint
69cf7453
About this object
Named runs, side by sideCells kept in separate runs with wide gutters between them, each run under a slot of its own where its name goes.

A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
Symbol
factor
6,568
0
IDS21GAS720STAT118NRP216ILF315CALD114+12,683 more
Levels
12,689
Used
6,568
Unused
6,121
Rows per level, the 50 commonest of 12,689
IDS21GAS720STAT118NRP216ILF315CALD114GNAS14PLEC14AK212CAST12DDX1712EDNRB12FKBP1A12GART12HFE12NAP1L112PPFIA112RPL1312SFRS13A12EIF510FN110MAX10MPZL110N4BP2L210ARMC89ASAH19ATP2A29CFLAR9FYN9KDELR39KLC19LAMP29NCAPH29NFX19SKP29SYNGR19TANK9ACTG18BMP2K8CELF18CLCN38CTBP28HNRNPA18HPS18MCL18MLX8RAB27A8RECQL8RPLP08SERINC38
Probe.x
factor
10,141
0
201373_at7216971_s_at7202191_s_at4202192_s_at4204271_s_at4204273_at4+22,277 more
Levels
22,283
Used
10,141
Unused
12,142
Rows per level, the 50 commonest of 22,283
201373_at7216971_s_at7202191_s_at4202192_s_at4204271_s_at4204273_at4206701_x_at4207467_x_at4207704_s_at4208908_s_at4210841_s_at4210872_x_at4211067_s_at4211844_s_at4212586_at4213849_s_at4214632_at4218264_at4219165_at4219367_s_at41861_at3200037_s_at3200705_s_at3200709_at3200783_s_at3200821_at3200887_s_at3201091_s_at3201202_at3201469_s_at3201487_at3202065_s_at3202066_at3202168_at3202277_at3202278_s_at3202438_x_at3202439_s_at3202471_s_at3202487_s_at3202584_at3202585_s_at3202741_at3202742_s_at3202795_x_at3202949_s_at3203041_s_at3203042_at3203255_at3203313_s_at3
Description.x
factor
6,568
0
iduronate 2-sulfatase21growth arrest-specific 720signal transducer and activator of transcription 1, 91kDa18neuropilin 216interleukin enhancer binding factor 3, 90kDa15caldesmon 114+12,682 more
Levels
12,688
Used
6,568
Unused
6,120
Rows per level, the 50 commonest of 12,688
iduronate 2-sulfatase21growth arrest-specific 720signal transducer and activator of transcription 1, 91kDa18neuropilin 216interleukin enhancer binding factor 3, 90kDa15caldesmon 114GNAS complex locus14plectin14adenylate kinase 212calpastatin12DEAD (Asp-Glu-Ala-Asp) box polypeptide 1712endothelin receptor type B12FK506 binding protein 1A, 12kDa12hemochromatosis12nucleosome assembly protein 1-like 112phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase12protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 112ribosomal protein L1312splicing factor, arginine/serine-rich 13A12eukaryotic translation initiation factor 510fibronectin 110MYC associated factor X10myelin protein zero-like 110NEDD4 binding protein 2-like 210armadillo repeat containing 89ATPase, Ca++ transporting, cardiac muscle, slow twitch 29CASP8 and FADD-like apoptosis regulator9FYN oncogene related to SRC, FGR, YES9KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 39kinesin light chain 19lysosomal-associated membrane protein 29N-acylsphingosine amidohydrolase (acid ceramidase) 19non-SMC condensin II complex, subunit H29nuclear transcription factor, X-box binding 19S-phase kinase-associated protein 2 (p45)9synaptogyrin 19TRAF family member-associated NFKB activator9actin, gamma 18BMP2 inducible kinase8chloride channel 38C-terminal binding protein 28CUGBP, Elav-like family member 18Hermansky-Pudlak syndrome 18heterogeneous nuclear ribonucleoprotein A18MAX-like protein X8myeloid cell leukemia sequence 1 (BCL2-related)8RAB27A, member RAS oncogene family8RecQ protein-like (DNA helicase Q1-like)8ribosomal protein, large, P08sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)8
Gene.x
integer
6,568
0
9 – 553115mean 2.351e+4
Min.
9
1st Qu.
4837
Median
9062
Mean
23508.7
3rd Qu.
27101
Max.
553115
Std. dev
35484
Skewness
4.457
Kurtosis
34.9
Outliers
1,1350 low · 1135 high
Probe.y
factor
7,182
0
GI_21040337-I12GI_21361768-S9GI_11038618-S8GI_27777635-S8GI_15149460-I7GI_15149464-A7+24,120 more
Levels
24,126
Used
7,182
Unused
16,944
Rows per level, the 50 commonest of 24,126
GI_21040337-I12GI_21361768-S9GI_11038618-S8GI_27777635-S8GI_15149460-I7GI_15149464-A7GI_18426899-A7GI_4502146-S7GI_5360207-A7GI_5360207-I7GI_5360215-I7GI_7706588-I7GI_13540470-S6GI_15431294-I6GI_15431296-A6GI_15451891-S6GI_19913435-S6GI_20336262-I6GI_21071055-S6GI_21327706-A6GI_21327707-I6GI_21359840-S6GI_21536299-I6GI_21536300-A6GI_21536300-I6GI_24797084-S6GI_26665888-I6GI_26665889-I6GI_28558997-A6GI_31377794-S6GI_34147516-S6GI_38016902-S6GI_4504036-S6GI_4504894-S6GI_4506364-S6GI_4557792-S6GI_5453713-S6GI_10863926-S5GI_11863160-A5GI_12711659-S5GI_14110406-A5GI_14110413-A5GI_14195631-I5GI_14670363-I5GI_14916464-S5GI_16507969-S5GI_16933541-I5GI_16933543-A5GI_17402905-S5GI_19923197-S5
Description.y
factor
6,568
0
iduronate 2-sulfatase21growth arrest-specific 720signal transducer and activator of transcription 1, 91kDa18neuropilin 216interleukin enhancer binding factor 3, 90kDa15caldesmon 114+15,909 more
Levels
15,915
Used
6,568
Unused
9,347
Rows per level, the 50 commonest of 15,915
iduronate 2-sulfatase21growth arrest-specific 720signal transducer and activator of transcription 1, 91kDa18neuropilin 216interleukin enhancer binding factor 3, 90kDa15caldesmon 114GNAS complex locus14plectin14adenylate kinase 212calpastatin12DEAD (Asp-Glu-Ala-Asp) box polypeptide 1712endothelin receptor type B12FK506 binding protein 1A, 12kDa12hemochromatosis12nucleosome assembly protein 1-like 112phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase12protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 112ribosomal protein L1312splicing factor, arginine/serine-rich 13A12eukaryotic translation initiation factor 510fibronectin 110MYC associated factor X10myelin protein zero-like 110NEDD4 binding protein 2-like 210armadillo repeat containing 89ATPase, Ca++ transporting, cardiac muscle, slow twitch 29CASP8 and FADD-like apoptosis regulator9FYN oncogene related to SRC, FGR, YES9KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 39kinesin light chain 19lysosomal-associated membrane protein 29N-acylsphingosine amidohydrolase (acid ceramidase) 19non-SMC condensin II complex, subunit H29nuclear transcription factor, X-box binding 19S-phase kinase-associated protein 2 (p45)9synaptogyrin 19TRAF family member-associated NFKB activator9actin, gamma 18BMP2 inducible kinase8chloride channel 38C-terminal binding protein 28CUGBP, Elav-like family member 18Hermansky-Pudlak syndrome 18heterogeneous nuclear ribonucleoprotein A18MAX-like protein X8myeloid cell leukemia sequence 1 (BCL2-related)8RAB27A, member RAS oncogene family8RecQ protein-like (DNA helicase Q1-like)8ribosomal protein, large, P08sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)8
Gene.y
integer
6,568
0
9 – 553115mean 2.351e+4
Min.
9
1st Qu.
4837
Median
9062
Mean
23508.7
3rd Qu.
27101
Max.
553115
Std. dev
35484
Skewness
4.457
Kurtosis
34.9
Outliers
1,1350 low · 1135 high
Version history
VersionReleasedRows × ColsChangeStored asConfidence
3.232026-04-2811,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.222025-10-2911,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.212025-04-1511,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.202024-10-2911,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.192024-04-3011,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.182023-10-2411,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.172023-04-2511,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.162022-11-0111,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.152022-04-2611,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.142021-10-2611,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.132021-05-1911,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.122020-10-2711,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.112020-04-2711,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.102019-10-2911,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.92019-09-1211,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.82018-10-3011,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.72018-04-3011,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.62017-10-3011,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.52017-04-2411,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.42016-10-1711,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.32016-05-0311,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.22015-10-1311,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.12015-04-1611,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
3.02014-10-1311,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
2.142014-07-2111,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
2.132013-10-1411,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
2.122013-04-0311,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
2.112012-10-0111,298 × 7Unchangedrda · xz
version 2 · 1.0 MB
exact
2.102012-03-3011,298 × 7Repackagedrda · xz
version 2 · 1.0 MB
exact
2.92011-10-3111,298 × 7Unchangedrda · gzip
version 2 · 1.5 MB
exact
2.82011-08-2511,298 × 7Unchangedrda · gzip
version 2 · 1.5 MB
exact
2.72010-10-1811,298 × 7–rda · gzip
version 2 · 1.5 MB
exact

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