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dataFilt

Gene Expression (Rnaseqv2) data from TCGA LUAD

Bundled with MoonlightR · exported, loads via data()

Class
matrix
Dimensions
13,742 × 20
Missing
0
Format
rda · bzip2
version 2 · 507 KB
File
data/dataFilt.rda
Fingerprint
38bfefc3
Format documented
Yes
Source
Source not stated
About this object
A flat block of values with dimensionsA block of cells sharing every edge, with nothing above the columns and nothing in it: a name here is hung on the whole block rather than on one column.

A single vector with a dim attribute. All elements share one type. R object catalogue

Values

Computed over every cell in the object, reading it as one vector.

numeric
Cells
274,840
Missing
0
Min.
0
1st Qu.
307
Median
1005
Mean
2851.73
3rd Qu.
2513
Max.
995243
Std. dev
13469.6
Distinct
5,798
Skewness
42.1
Kurtosis
2569
Whole numbers
Yes
Zeros
2,701 0.98%
Outliers
25,700 0 low · 25700 high
Margins

The mean of each row, and of each column, summarised. Reading every cell as one vector gives a matrix and its transpose the same answer; these do not.

MarginMin.1st Qu.MedianMean3rd Qu.Max.Std. dev
Rows46.35405.231133.52851.72647.54.6456e+59962.6
Columns2849.72851.52852.12851.72852.42852.50.93013

The row means vary far more than the column means, so what separates the values runs down the rows.

Dimensions and labels
MarginLabelsCount
RowsA1BG, A2M, A4GALT, AAAS, AACS, AADAC, AADAT, AAGAB, AAK1, AAMP, AARS2, AARSD1, …13,742
ColumnsTCGA-50-5932-11A-01R-1755-07, TCGA-69-7978-01A-11R-2187-07, TCGA-44-7661-01A-11R-2066-07, TCGA-55-A48Y-01A-11R-A24H-07, TCGA-55-6982-11A-01R-1949-07, TCGA-44-2668-01A-01R-A278-07, TCGA-44-6776-11A-01R-1858-07, TCGA-50-6594-01A-11R-1755-07, TCGA-83-5908-01A-21R-2287-07, TCGA-44-5645-11A-01R-1628-07, TCGA-55-6983-11A-01R-1949-07, TCGA-38-4626-11A-01R-1758-07, …20
Columns

This object is 20 columns wide. A matrix carries no per-column schema, so its width is what the catalogue records and there is nothing to list one column at a time. What it holds is described whole instead, summarised over every cell: see Values and Margins above.

Structure fingerprint

15 other datasets carry the same structure fingerprint. That fingerprint is a digest of the column names and their types, and a matrix carries neither, so on one it comes down to the width and the type held: a match is another object of 20 columns holding the same type rather than one with the same columns. The datasets are not listed, because that is not a list of anything this one is related to.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-2813,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.222025-10-2913,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.212025-04-1513,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.202024-10-2913,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.192024-04-3013,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.182023-10-2413,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.172023-08-0313,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.162022-11-0113,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.152022-04-2613,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.142021-10-2613,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.132021-05-1913,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.122020-10-2713,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.112020-07-0813,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.102019-10-2913,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.92019-10-1013,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.82018-10-3013,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.72018-05-2513,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.62017-10-3013,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.52017-04-2413,742 × 20Unchangedrda · bzip2
version 2 · 507 KB
exact
3.42016-10-1713,742 × 20–rda · bzip2
version 2 · 507 KB
exact

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