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tissue

Example data for `MetCirc`: `tissue`

Bundled with MetCirc · exported, loads via data()

Class
data.frame
Dimensions
37,863 × 7
Missing
0
Format
rda · gzip
version 2 · 141 KB
File
data/idMSMStissueproject.RData
Fingerprint
a52ee0db
About this object
Named runs, side by sideCells kept in separate runs with wide gutters between them, each run under a slot of its own where its name goes.

A list of equal-length columns presented as a table. Almost everything rectangular in R inherits from it, which is why the class column so often has more than one entry. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
mz
numeric
2,470
0
89.0385 – 1323.62mean 338.7
Min.
89.0385
1st Qu.
177.163
Median
289.251
Mean
338.669
3rd Qu.
458.282
Max.
1323.62
Std. dev
197.06
Skewness
1.028
Kurtosis
0.9355
Outliers
6450 low · 645 high
intensity
integer
101
0
0 – 100mean 12.46
Min.
0
1st Qu.
3
Median
6
Mean
12.4585
3rd Qu.
13
Max.
100
Std. dev
18.831
Skewness
3.179
Kurtosis
10.8
Zeros
1
Outliers
4,0480 low · 4048 high
rt
numeric
2,299
0
58.938 – 2698.57mean 1119
Min.
58.938
1st Qu.
1024.35
Median
1051.56
Mean
1119.42
3rd Qu.
1159.17
Max.
2698.57
Std. dev
362.246
Skewness
-0.0792
Kurtosis
3.436
Outliers
8,3472630 low · 5717 high
id
factor
895
0
985.3889122_1166.152472_329216987.3840996_1161.185496_622151096.48768_1159.507464_62213972.4138169_1158.170968_62213973.4201587_1159.165968_62213974.4187586_1160.51548_62213+889 more
Levels
895
Used
895
Rows per level, the 50 commonest of 895
985.3889122_1166.152472_329216987.3840996_1161.185496_622151096.48768_1159.507464_62213972.4138169_1158.170968_62213973.4201587_1159.165968_62213974.4187586_1160.51548_62213987.3772668_1156.069968_537213971.4153386_1159.16696_62212973.415412_1158.162976_62212987.39058_1165.214968_3292121135.474803_1050.78696_532101136.475636_1050.278992_532101398.707758_1049.767952_53210968.900985_1161.285952_62210985.3948373_1166.748952_3292101136.468651_1049.91748_532091221.664409_1158.936976_622091365.717774_1160.07148_622091366.72168_1159.190992_62209971.4105793_1158.166456_622091399.712418_1049.512992_53207913.4036553_1162.008992_330207966.453638_1158.165968_622071134.470083_1050.77096_532061135.462675_1050.512992_532061398.711594_1050.146976_53206949.4245398_1158.16348_622061133.469902_1050.520976_532051133.457598_1049.512992_532041133.464104_1049.943472_532041129.515068_1051.796464_532031135.468701_1050.526472_53203988.4078659_1057.626976_2592021111.477289_1049.966992_532011128.510452_1049.798976_53201807.5396236_1159.152992_622011128.505607_1049.863952_53200968.4607694_1162.097952_330199980.4314876_1165.85496_329198968.4368286_1050.510984_53197807.5456472_1159.166464_62196845.4196278_1050.245488_53196967.4576559_1158.164944_62196827.4046708_1050.629984_53195827.4095738_1049.544944_53195845.4152015_1049.658992_53195666.3528531_1157.66448_62192666.356158_1159.167968_62192977.3894986_1158.003992_62188789.2282865_1049.542968_53187
add
factor
1,075
0
22,329[M+H]+ 188.15595[M+H-C2H4]+ 188.15594[M+2H]2+ 188.15593[M+H-CH4]+ 188.15592[2M+Na]+ 188.15586+1,069 more
Levels
1,075
Used
1,075
Rows per level, the 50 commonest of 1,075
22,329[M+H]+ 188.15595[M+H-C2H4]+ 188.15594[M+2H]2+ 188.15593[M+H-CH4]+ 188.15592[2M+Na]+ 188.15586[M+2H]2+ 188.15479[M+H]+ 188.15478[M+H-C2H4]+ 188.15478[M+H-CH2]+ 188.15478[M+2H-C2H4]2+ 568.18777[M+H-C4H8]+ 188.15477[M+H-CH4]+ 188.15476[2M+Na]+ 188.15472[M+K]+ 536.226 [M+Na]+ 552.272[3M+2H]2+ 188.15465[M+2H]2+ 292.117 [M+H-C6H10O4]+ 292.11763[M+H-C6H10O5]+ 612.34961[M+Na]+ 292.11760[M+H-C4H8]+ 270.23158[M+H]+ 270.23157[M+H-H20]+ 412.12257[M+Na]+ 412.12257[M+H-C2H4]+ 136.12455[M+Na]+ 104.05155[M+H-CH4]+ 136.124 [M+H-C2H4]+ 148.12854[3M+H+Na]2+ 136.12453[M+H]+ 148.128 [M+H-C4H8]+ 204.18453[M+H-CH2]+ 136.12453[M+H-C4H8]+ 270.23452[M+H-CO]+ 146.06352[M+2H-C2H4]2+ 380.3451[M+H-C3H2O3]+ 230.04751[M+H-CH2]+ 270.23151[M+Na]+ 612.34951[M+2Na]2+ 272.24750[M+H]+ 108.096 [M+2H]2+ 216.18650[M+H]+ 270.23450[2M+2Na-H]+ 208.05849[3M+2H]2+ 108.09649[M+2H-C4H8]2+ 380.3449[M+H-C2H4]+ 216.18649[M+H-C4H8]+ 216.18649[M+H-CH2]+ 108.096 [M+2H-C2H4]2+ 216.18649[M+H-CH2]+ 204.18449[M+H-H20]+ 146.06349[M+H+K]2+ 230.26149[2M+3H]3+ 300.23948[M+2Na-H]+ 244.27748[M+H]+ 612.34948
pcgroup
integer
278
0
2 – 568mean 71.07
Min.
2
1st Qu.
53
Median
62
Mean
71.0736
3rd Qu.
74
Max.
568
Std. dev
50.3136
Skewness
3.622
Kurtosis
21.21
Outliers
8,0572763 low · 5294 high
iso
factor
1,060
0
19,140[102][M]+50[125][M]+50[16][M]+49[3][M]+49[402][M]+49+1,054 more
Levels
1,060
Used
1,060
Rows per level, the 50 commonest of 1,060
19,140[102][M]+50[125][M]+50[16][M]+49[3][M]+49[402][M]+49[444][M]+49[50][M]+49[5][M]+49[102][M+1]+48[105][M]+48[113][M]+48[168][M]+48[198][M]+48[227][M]+48[243][M]+48[250][M]+48[277][M]+48[277][M+1]+48[284][M]+48[322][M]+48[6][M+2]+48[78][M+1]+48[92][M]+48[92][M+1]+48[95][M]+48[152][M]+47[195][M]+47[272][M]+47[306][M]+47[480][M]+47[84][M]+47[105][M+2]+46[155][M]+46[223][M]+46[227][M+1]+46[306][M+1]+46[306][M+2]+46[322][M+1]+46[6][M+1]+46[85][M]+46[116][M]+45[125][M+1]+45[131][M]+45[152][M+1]+45[169][M]+45[226][M]+45[261][M]+45[309][M]+45[480][M+1]+45
Version history
VersionReleasedRows × ColsChangeStored asConfidence
3.232026-04-2837,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.222025-10-2937,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.212025-04-1537,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.202024-10-2937,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.192024-04-3037,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.182023-10-2437,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.172023-04-2537,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.162022-11-0137,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.152022-04-2637,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.142021-10-2637,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.132021-05-1937,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.122020-10-2737,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.112020-04-2737,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.102019-10-2937,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.92019-05-0237,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.82019-01-0437,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.72018-04-3037,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.62017-10-3037,863 × 7Unchangedrda · gzip
version 2 · 141 KB
exact
3.52017-04-2437,863 × 7Data changed
Dimensions, Class and Missing unchanged
rda · gzip
version 2 · 141 KB
exact
3.42016-12-2037,863 × 7rda · gzip
version 2 · 141 KB
exact

Dimensions is the row and column count. Class is what R calls the object. Missing is how many values were recorded as absent.

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