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HMP2_taxonomy

Bundled with Maaslin2 · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
1,595 × 88
Missing
0
Format
tsv · none
770 KB
File
inst/extdata/HMP2_taxonomy.tsv
Fingerprint
418bcaf2
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
ID
character
1,595
0
8 – 11 characters
Bifidobacterium.adolescentis
numeric
552
0
0 – 0.2998mean 0.0031
Min.
0
1st Qu.
0
Median
0
Mean
0.0031
3rd Qu.
0.0004
Max.
0.2998
Std. dev
0.0162
Skewness
10.36
Kurtosis
138.5
Zeros
1,040
Outliers
3120 low · 312 high
Bifidobacterium.bifidum
numeric
426
0
0 – 0.1177mean 0.0009
Min.
0
1st Qu.
0
Median
0
Mean
0.0009
3rd Qu.
0.0001
Max.
0.1177
Std. dev
0.0044
Skewness
15.67
Kurtosis
353.5
Zeros
1,170
Outliers
3680 low · 368 high
Bifidobacterium.longum
numeric
994
0
0 – 0.1664mean 0.0031
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.0031
3rd Qu.
0.0018
Max.
0.1664
Std. dev
0.01
Skewness
7.907
Kurtosis
90.4
Zeros
593
Outliers
2370 low · 237 high
Bifidobacterium.pseudocatenulatum
numeric
230
0
0 – 0.0773mean 0.0004
Min.
0
1st Qu.
0
Median
0
Mean
0.0004
3rd Qu.
0
Max.
0.0773
Std. dev
0.0033
Skewness
15.28
Kurtosis
278.3
Zeros
1,365
Collinsella.aerofaciens
numeric
818
0
0 – 0.064mean 0.0014
Min.
0
1st Qu.
0
Median
0
Mean
0.0014
3rd Qu.
0.0009
Max.
0.064
Std. dev
0.0045
Skewness
7.929
Kurtosis
84.14
Zeros
760
Outliers
2180 low · 218 high
Bacteroides.caccae
numeric
1,072
0
0 – 0.5395mean 0.0295
Min.
0
1st Qu.
0
Median
0.0129
Mean
0.0295
3rd Qu.
0.0413
Max.
0.5395
Std. dev
0.0447
Skewness
3.166
Kurtosis
17.97
Zeros
523
Outliers
980 low · 98 high
Bacteroides.cellulosilyticus
numeric
525
0
0 – 0.4854mean 0.0101
Min.
0
1st Qu.
0
Median
0
Mean
0.0101
3rd Qu.
0.0009
Max.
0.4854
Std. dev
0.0342
Skewness
6.254
Kurtosis
53.09
Zeros
1,069
Outliers
3530 low · 353 high
Bacteroides.dorei
numeric
1,014
0
0 – 0.8854mean 0.0259
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.0259
3rd Qu.
0.0105
Max.
0.8854
Std. dev
0.0874
Skewness
6.312
Kurtosis
47.64
Zeros
547
Outliers
2500 low · 250 high
Bacteroides.eggerthii
numeric
307
0
0 – 0.558mean 0.0114
Min.
0
1st Qu.
0
Median
0
Mean
0.0114
3rd Qu.
0
Max.
0.558
Std. dev
0.0486
Skewness
5.88
Kurtosis
40.03
Zeros
1,286
Bacteroides.faecis
numeric
595
0
0 – 0.3155mean 0.0049
Min.
0
1st Qu.
0
Median
0
Mean
0.0049
3rd Qu.
0.0004
Max.
0.3155
Std. dev
0.0195
Skewness
8.094
Kurtosis
91.09
Zeros
991
Outliers
3430 low · 343 high
Bacteroides.finegoldii
numeric
395
0
0 – 0.2254mean 0.0054
Min.
0
1st Qu.
0
Median
0
Mean
0.0054
3rd Qu.
2.05e-6
Max.
0.2254
Std. dev
0.019
Skewness
5.202
Kurtosis
32.79
Zeros
1,195
Outliers
3880 low · 388 high
Bacteroides.fragilis
numeric
889
0
0 – 0.6843mean 0.03
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.03
3rd Qu.
0.0182
Max.
0.6843
Std. dev
0.0784
Skewness
4.119
Kurtosis
19.47
Zeros
704
Outliers
2470 low · 247 high
Bacteroides.intestinalis
numeric
194
0
0 – 0.1128mean 0.001
Min.
0
1st Qu.
0
Median
0
Mean
0.001
3rd Qu.
0
Max.
0.1128
Std. dev
0.0064
Skewness
10.98
Kurtosis
144.2
Zeros
1,402
Bacteroides.massiliensis
numeric
560
0
0 – 0.4219mean 0.019
Min.
0
1st Qu.
0
Median
0
Mean
0.019
3rd Qu.
0.0007
Max.
0.4219
Std. dev
0.0508
Skewness
3.767
Kurtosis
16.69
Zeros
1,018
Outliers
3780 low · 378 high
Bacteroides.ovatus
numeric
1,320
0
0 – 0.514mean 0.0366
Min.
0
1st Qu.
0.0009
Median
0.0118
Mean
0.0366
3rd Qu.
0.0443
Max.
0.514
Std. dev
0.0624
Skewness
3.159
Kurtosis
12.34
Zeros
276
Outliers
1520 low · 152 high
Bacteroides.salyersiae
numeric
168
0
0 – 0.0953mean 0.0013
Min.
0
1st Qu.
0
Median
0
Mean
0.0013
3rd Qu.
0
Max.
0.0953
Std. dev
0.0063
Skewness
7.765
Kurtosis
80.42
Zeros
1,428
Bacteroides.stercoris
numeric
1,046
0
0 – 0.622mean 0.0599
Min.
0
1st Qu.
0
Median
0.0015
Mean
0.0599
3rd Qu.
0.0756
Max.
0.622
Std. dev
0.1079
Skewness
2.217
Kurtosis
4.783
Zeros
532
Outliers
1900 low · 190 high
Bacteroides.thetaiotaomicron
numeric
1,115
0
0 – 0.3329mean 0.0178
Min.
0
1st Qu.
0
Median
0.0022
Mean
0.0178
3rd Qu.
0.0157
Max.
0.3329
Std. dev
0.0408
Skewness
3.992
Kurtosis
18.5
Zeros
474
Outliers
1890 low · 189 high
Bacteroides.uniformis
numeric
1,386
0
0 – 0.8991mean 0.0763
Min.
0
1st Qu.
0.004
Median
0.0396
Mean
0.0763
3rd Qu.
0.1082
Max.
0.8991
Std. dev
0.1025
Skewness
2.386
Kurtosis
8.084
Zeros
204
Outliers
990 low · 99 high
Bacteroides.vulgatus
numeric
1,432
0
0 – 0.6794mean 0.0685
Min.
0
1st Qu.
0.0003
Median
0.032
Mean
0.0685
3rd Qu.
0.088
Max.
0.6794
Std. dev
0.0998
Skewness
2.53
Kurtosis
7.829
Zeros
140
Outliers
1360 low · 136 high
Bacteroides.xylanisolvens
numeric
1,058
0
0 – 0.146mean 0.0058
Min.
0
1st Qu.
0
Median
0.0005
Mean
0.0058
3rd Qu.
0.0044
Max.
0.146
Std. dev
0.0144
Skewness
4.741
Kurtosis
28.86
Zeros
523
Outliers
2210 low · 221 high
Bacteroidales.bacterium.ph8
numeric
472
0
0 – 0.0798mean 0.0015
Min.
0
1st Qu.
0
Median
0
Mean
0.0015
3rd Qu.
0.0003
Max.
0.0798
Std. dev
0.0051
Skewness
6.535
Kurtosis
58.59
Zeros
1,123
Outliers
3390 low · 339 high
Barnesiella.intestinihominis
numeric
484
0
0 – 0.1602mean 0.008
Min.
0
1st Qu.
0
Median
0
Mean
0.008
3rd Qu.
0.0024
Max.
0.1602
Std. dev
0.0195
Skewness
3.335
Kurtosis
12.96
Zeros
1,111
Outliers
3510 low · 351 high
Coprobacter.fastidiosus
numeric
177
0
0 – 0.1269mean 0.0003
Min.
0
1st Qu.
0
Median
0
Mean
0.0003
3rd Qu.
0
Max.
0.1269
Std. dev
0.0035
Skewness
30.23
Kurtosis
1065
Zeros
1,418
Odoribacter.splanchnicus
numeric
662
0
0 – 0.0788mean 0.0048
Min.
0
1st Qu.
0
Median
0
Mean
0.0048
3rd Qu.
0.0072
Max.
0.0788
Std. dev
0.0084
Skewness
2.918
Kurtosis
12.47
Zeros
933
Outliers
1110 low · 111 high
Parabacteroides.distasonis
numeric
925
0
0 – 0.6053mean 0.0112
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0112
3rd Qu.
0.009
Max.
0.6053
Std. dev
0.034
Skewness
8.921
Kurtosis
114.6
Zeros
660
Outliers
2270 low · 227 high
Parabacteroides.goldsteinii
numeric
186
0
0 – 0.0796mean 0.001
Min.
0
1st Qu.
0
Median
0
Mean
0.001
3rd Qu.
0
Max.
0.0796
Std. dev
0.0053
Skewness
8.584
Kurtosis
88.24
Zeros
1,408
Parabacteroides.merdae
numeric
912
0
0 – 0.3452mean 0.0182
Min.
0
1st Qu.
0
Median
0.0026
Mean
0.0182
3rd Qu.
0.0266
Max.
0.3452
Std. dev
0.0307
Skewness
3.023
Kurtosis
15.17
Zeros
684
Outliers
1130 low · 113 high
Parabacteroides.unclassified
numeric
728
0
0 – 0.2735mean 0.0111
Min.
0
1st Qu.
0
Median
0
Mean
0.0111
3rd Qu.
0.0082
Max.
0.2735
Std. dev
0.0275
Skewness
4.269
Kurtosis
24.01
Zeros
865
Outliers
2490 low · 249 high
Paraprevotella.clara
numeric
191
0
0 – 0.096mean 0.001
Min.
0
1st Qu.
0
Median
0
Mean
0.001
3rd Qu.
0
Max.
0.096
Std. dev
0.005
Skewness
9.291
Kurtosis
121.4
Zeros
1,404
Paraprevotella.unclassified
numeric
244
0
0 – 0.2015mean 0.0025
Min.
0
1st Qu.
0
Median
0
Mean
0.0025
3rd Qu.
0
Max.
0.2015
Std. dev
0.0121
Skewness
8.63
Kurtosis
95.54
Zeros
1,352
Prevotella.copri
numeric
430
0
0 – 0.8884mean 0.0471
Min.
0
1st Qu.
0
Median
0
Mean
0.0471
3rd Qu.
0
Max.
0.8884
Std. dev
0.1499
Skewness
3.373
Kurtosis
10.49
Zeros
1,156
Outliers
3590 low · 359 high
Alistipes.finegoldii
numeric
787
0
0 – 0.138mean 0.0037
Min.
0
1st Qu.
0
Median
0
Mean
0.0037
3rd Qu.
0.0026
Max.
0.138
Std. dev
0.0103
Skewness
5.87
Kurtosis
47.51
Zeros
807
Outliers
2450 low · 245 high
Alistipes.onderdonkii
numeric
895
0
0 – 0.4996mean 0.01
Min.
0
1st Qu.
0
Median
0.0004
Mean
0.01
3rd Qu.
0.0087
Max.
0.4996
Std. dev
0.0272
Skewness
8.111
Kurtosis
102.8
Zeros
699
Outliers
2020 low · 202 high
Alistipes.putredinis
numeric
941
0
0 – 0.3394mean 0.0311
Min.
0
1st Qu.
0
Median
0.0041
Mean
0.0311
3rd Qu.
0.052
Max.
0.3394
Std. dev
0.0462
Skewness
2.334
Kurtosis
7.886
Zeros
655
Outliers
560 low · 56 high
Alistipes.shahii
numeric
757
0
0 – 0.1415mean 0.0043
Min.
0
1st Qu.
0
Median
0
Mean
0.0043
3rd Qu.
0.0049
Max.
0.1415
Std. dev
0.009
Skewness
4.749
Kurtosis
43.06
Zeros
838
Outliers
1910 low · 191 high
Alistipes.unclassified
numeric
225
0
0 – 0.1824mean 0.0027
Min.
0
1st Qu.
0
Median
0
Mean
0.0027
3rd Qu.
0
Max.
0.1824
Std. dev
0.0143
Skewness
7.869
Kurtosis
71.63
Zeros
1,371
Streptococcus.salivarius
numeric
560
0
0 – 0.1211mean 0.0005
Min.
0
1st Qu.
0
Median
0
Mean
0.0005
3rd Qu.
0.0001
Max.
0.1211
Std. dev
0.0034
Skewness
28.34
Kurtosis
962.3
Zeros
1,013
Outliers
3010 low · 301 high
Clostridium.bolteae
numeric
1,108
0
0 – 0.326mean 0.004
Min.
0
1st Qu.
0
Median
0.0003
Mean
0.004
3rd Qu.
0.0022
Max.
0.326
Std. dev
0.0135
Skewness
11.6
Kurtosis
222.8
Zeros
457
Outliers
2570 low · 257 high
Clostridium.citroniae
numeric
429
0
0 – 0.1755mean 0.0003
Min.
0
1st Qu.
0
Median
0
Mean
0.0003
3rd Qu.
0
Max.
0.1755
Std. dev
0.0046
Skewness
35.4
Kurtosis
1332
Zeros
1,133
Outliers
3060 low · 306 high
Clostridium.clostridioforme
numeric
505
0
0 – 0.2355mean 0.0024
Min.
0
1st Qu.
0
Median
0
Mean
0.0024
3rd Qu.
0.0001
Max.
0.2355
Std. dev
0.0128
Skewness
9.813
Kurtosis
122.6
Zeros
1,077
Outliers
3230 low · 323 high
Clostridium.hathewayi
numeric
722
0
0 – 0.5518mean 0.0018
Min.
0
1st Qu.
0
Median
0
Mean
0.0018
3rd Qu.
0.0003
Max.
0.5518
Std. dev
0.016
Skewness
27.05
Kurtosis
891.6
Zeros
838
Outliers
2510 low · 251 high
Clostridium.leptum
numeric
802
0
0 – 0.1533mean 0.0019
Min.
0
1st Qu.
0
Median
0
Mean
0.0019
3rd Qu.
0.001
Max.
0.1533
Std. dev
0.0076
Skewness
12.56
Kurtosis
212.3
Zeros
783
Outliers
2250 low · 225 high
Clostridium.nexile
numeric
272
0
0 – 0.109mean 0.0008
Min.
0
1st Qu.
0
Median
0
Mean
0.0008
3rd Qu.
0
Max.
0.109
Std. dev
0.005
Skewness
12.67
Kurtosis
213.8
Zeros
1,322
Clostridium.symbiosum
numeric
774
0
0 – 0.0961mean 0.0016
Min.
0
1st Qu.
0
Median
4.3e-6
Mean
0.0016
3rd Qu.
0.0005
Max.
0.0961
Std. dev
0.0063
Skewness
7.833
Kurtosis
79.53
Zeros
794
Outliers
2640 low · 264 high
Flavonifractor.plautii
numeric
1,042
0
0 – 0.115mean 0.0012
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.0012
3rd Qu.
0.0012
Max.
0.115
Std. dev
0.0044
Skewness
17.06
Kurtosis
391.1
Zeros
527
Outliers
1780 low · 178 high
Eubacterium.eligens
numeric
1,007
0
0 – 0.1517mean 0.0058
Min.
0
1st Qu.
0
Median
0.0009
Mean
0.0058
3rd Qu.
0.0062
Max.
0.1517
Std. dev
0.0127
Skewness
4.835
Kurtosis
32.26
Zeros
580
Outliers
1680 low · 168 high
Eubacterium.hallii
numeric
899
0
0 – 0.0656mean 0.0011
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0011
3rd Qu.
0.0008
Max.
0.0656
Std. dev
0.0038
Skewness
9.725
Kurtosis
127.7
Zeros
672
Outliers
1890 low · 189 high
Eubacterium.rectale
numeric
1,315
0
0 – 0.5376mean 0.0392
Min.
0
1st Qu.
0.0016
Median
0.0164
Mean
0.0392
3rd Qu.
0.0508
Max.
0.5376
Std. dev
0.0608
Skewness
3.304
Kurtosis
16.05
Zeros
277
Outliers
1150 low · 115 high
Eubacterium.siraeum
numeric
653
0
0 – 0.4108mean 0.01
Min.
0
1st Qu.
0
Median
0
Mean
0.01
3rd Qu.
0.002
Max.
0.4108
Std. dev
0.0334
Skewness
5.739
Kurtosis
42.38
Zeros
939
Outliers
3230 low · 323 high
Eubacterium.sp.3.1.31
numeric
213
0
0 – 0.1257mean 0.0004
Min.
0
1st Qu.
0
Median
0
Mean
0.0004
3rd Qu.
0
Max.
0.1257
Std. dev
0.0039
Skewness
23.71
Kurtosis
685.8
Zeros
1,378
Eubacterium.ventriosum
numeric
624
0
0 – 0.0667mean 0.0017
Min.
0
1st Qu.
0
Median
0
Mean
0.0017
3rd Qu.
0.0007
Max.
0.0667
Std. dev
0.0057
Skewness
6.474
Kurtosis
52.08
Zeros
968
Outliers
2920 low · 292 high
Ruminococcus.gnavus
numeric
953
0
0 – 0.4263mean 0.0044
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0044
3rd Qu.
0.0015
Max.
0.4263
Std. dev
0.0219
Skewness
12.06
Kurtosis
189.1
Zeros
625
Outliers
2310 low · 231 high
Ruminococcus.obeum
numeric
1,294
0
0 – 0.039mean 0.0016
Min.
0
1st Qu.
0.0001
Median
0.0005
Mean
0.0016
3rd Qu.
0.0016
Max.
0.039
Std. dev
0.0034
Skewness
5.221
Kurtosis
37.81
Zeros
249
Outliers
1820 low · 182 high
Ruminococcus.torques
numeric
1,504
0
0 – 0.1476mean 0.0062
Min.
0
1st Qu.
0.0012
Median
0.003
Mean
0.0062
3rd Qu.
0.0067
Max.
0.1476
Std. dev
0.011
Skewness
5.99
Kurtosis
55.29
Zeros
81
Outliers
1550 low · 155 high
Coprococcus.comes
numeric
834
0
0 – 0.0331mean 0.0012
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0012
3rd Qu.
0.0012
Max.
0.0331
Std. dev
0.0028
Skewness
5.317
Kurtosis
40.41
Zeros
747
Outliers
1930 low · 193 high
Dorea.longicatena
numeric
1,053
0
0 – 0.0866mean 0.0023
Min.
0
1st Qu.
0
Median
0.0005
Mean
0.0023
3rd Qu.
0.0023
Max.
0.0866
Std. dev
0.0054
Skewness
6.322
Kurtosis
63.14
Zeros
532
Outliers
1760 low · 176 high
Lachnospiraceae.bacterium.1.1.57FAA
numeric
464
0
0 – 0.1508mean 0.0014
Min.
0
1st Qu.
0
Median
0
Mean
0.0014
3rd Qu.
0.0001
Max.
0.1508
Std. dev
0.0077
Skewness
10.99
Kurtosis
151.2
Zeros
1,120
Outliers
2960 low · 296 high
Lachnospiraceae.bacterium.3.1.46FAA
numeric
972
0
0 – 0.0501mean 0.0016
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0016
3rd Qu.
0.0012
Max.
0.0501
Std. dev
0.0045
Skewness
5.374
Kurtosis
36.27
Zeros
603
Outliers
2020 low · 202 high
Roseburia.hominis
numeric
1,045
0
0 – 0.1054mean 0.003
Min.
0
1st Qu.
0
Median
0.0004
Mean
0.003
3rd Qu.
0.0023
Max.
0.1054
Std. dev
0.0086
Skewness
6.472
Kurtosis
53.07
Zeros
534
Outliers
2090 low · 209 high
Roseburia.intestinalis
numeric
996
0
0 – 0.7932mean 0.0265
Min.
0
1st Qu.
0
Median
0.0008
Mean
0.0265
3rd Qu.
0.0124
Max.
0.7932
Std. dev
0.0797
Skewness
5.135
Kurtosis
31.34
Zeros
594
Outliers
2500 low · 250 high
Roseburia.inulinivorans
numeric
1,062
0
0 – 0.2378mean 0.005
Min.
0
1st Qu.
0
Median
0.0007
Mean
0.005
3rd Qu.
0.0049
Max.
0.2378
Std. dev
0.0123
Skewness
7.748
Kurtosis
103.6
Zeros
521
Outliers
1800 low · 180 high
Roseburia.unclassified
numeric
510
0
0 – 0.129mean 0.0012
Min.
0
1st Qu.
0
Median
0
Mean
0.0012
3rd Qu.
0.0002
Max.
0.129
Std. dev
0.0058
Skewness
12.13
Kurtosis
203.7
Zeros
1,082
Outliers
3060 low · 306 high
Oscillibacter.unclassified
numeric
1,288
0
0 – 0.259mean 0.0069
Min.
0
1st Qu.
0.0005
Median
0.0025
Mean
0.0069
3rd Qu.
0.0067
Max.
0.259
Std. dev
0.0167
Skewness
7.71
Kurtosis
81.04
Zeros
299
Outliers
1400 low · 140 high
Peptostreptococcaceae.noname.unclassified
numeric
418
0
0 – 0.2523mean 0.0004
Min.
0
1st Qu.
0
Median
0
Mean
0.0004
3rd Qu.
0.0001
Max.
0.2523
Std. dev
0.0064
Skewness
37.67
Kurtosis
1466
Zeros
1,172
Outliers
3150 low · 315 high
Faecalibacterium.prausnitzii
numeric
1,532
0
0 – 0.747mean 0.1086
Min.
0
1st Qu.
0.0271
Median
0.0761
Mean
0.1086
3rd Qu.
0.1534
Max.
0.747
Std. dev
0.1138
Skewness
1.819
Kurtosis
4.169
Zeros
61
Outliers
750 low · 75 high
Ruminococcus.bromii
numeric
510
0
0 – 0.3866mean 0.0045
Min.
0
1st Qu.
0
Median
0
Mean
0.0045
3rd Qu.
0.0008
Max.
0.3866
Std. dev
0.0235
Skewness
10.89
Kurtosis
137.5
Zeros
1,083
Outliers
3430 low · 343 high
Ruminococcus.callidus
numeric
322
0
0 – 0.0778mean 0.0006
Min.
0
1st Qu.
0
Median
0
Mean
0.0006
3rd Qu.
0
Max.
0.0778
Std. dev
0.003
Skewness
13.71
Kurtosis
286.7
Zeros
1,272
Ruminococcus.lactaris
numeric
451
0
0 – 0.0642mean 0.0015
Min.
0
1st Qu.
0
Median
0
Mean
0.0015
3rd Qu.
0.0002
Max.
0.0642
Std. dev
0.0051
Skewness
5.854
Kurtosis
44.07
Zeros
1,141
Outliers
3480 low · 348 high
Subdoligranulum.unclassified
numeric
1,543
0
0 – 0.3776mean 0.0305
Min.
0
1st Qu.
0.0047
Median
0.0149
Mean
0.0305
3rd Qu.
0.0396
Max.
0.3776
Std. dev
0.0427
Skewness
2.993
Kurtosis
12.44
Zeros
49
Outliers
1150 low · 115 high
Coprobacillus.unclassified
numeric
405
0
0 – 0.1014mean 0.0004
Min.
0
1st Qu.
0
Median
0
Mean
0.0004
3rd Qu.
0
Max.
0.1014
Std. dev
0.003
Skewness
24.89
Kurtosis
776.1
Zeros
1,180
Outliers
3660 low · 366 high
Acidaminococcus.unclassified
numeric
195
0
0 – 0.3453mean 0.0043
Min.
0
1st Qu.
0
Median
0
Mean
0.0043
3rd Qu.
0
Max.
0.3453
Std. dev
0.025
Skewness
8.659
Kurtosis
84.77
Zeros
1,401
Dialister.invisus
numeric
777
0
0 – 0.5657mean 0.0103
Min.
0
1st Qu.
0
Median
0
Mean
0.0103
3rd Qu.
0.0084
Max.
0.5657
Std. dev
0.0318
Skewness
9.639
Kurtosis
134.9
Zeros
818
Outliers
2130 low · 213 high
Veillonella.atypica
numeric
516
0
0 – 0.1067mean 0.0005
Min.
0
1st Qu.
0
Median
0
Mean
0.0005
3rd Qu.
0.0001
Max.
0.1067
Std. dev
0.0032
Skewness
24.88
Kurtosis
769.8
Zeros
1,071
Outliers
3060 low · 306 high
Veillonella.dispar
numeric
481
0
0 – 0.2314mean 0.0005
Min.
0
1st Qu.
0
Median
0
Mean
0.0005
3rd Qu.
0.0001
Max.
0.2314
Std. dev
0.0062
Skewness
33.51
Kurtosis
1231
Zeros
1,100
Outliers
2980 low · 298 high
Veillonella.parvula
numeric
833
0
0 – 0.5477mean 0.0045
Min.
0
1st Qu.
0
Median
0
Mean
0.0045
3rd Qu.
0.0007
Max.
0.5477
Std. dev
0.0294
Skewness
11.25
Kurtosis
146.9
Zeros
742
Outliers
2650 low · 265 high
Veillonella.unclassified
numeric
958
0
0 – 0.4487mean 0.0044
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0044
3rd Qu.
0.0007
Max.
0.4487
Std. dev
0.0215
Skewness
11.28
Kurtosis
176.9
Zeros
600
Outliers
2640 low · 264 high
Burkholderiales.bacterium.1.1.47
numeric
716
0
0 – 0.0521mean 0.0012
Min.
0
1st Qu.
0
Median
0
Mean
0.0012
3rd Qu.
0.0008
Max.
0.0521
Std. dev
0.0035
Skewness
6.292
Kurtosis
56.54
Zeros
864
Outliers
2580 low · 258 high
Parasutterella.excrementihominis
numeric
745
0
0 – 0.0815mean 0.001
Min.
0
1st Qu.
0
Median
0
Mean
0.001
3rd Qu.
0.0006
Max.
0.0815
Std. dev
0.0034
Skewness
12.01
Kurtosis
232
Zeros
836
Outliers
2300 low · 230 high
Sutterella.wadsworthensis
numeric
433
0
0 – 0.3442mean 0.0061
Min.
0
1st Qu.
0
Median
0
Mean
0.0061
3rd Qu.
0.0001
Max.
0.3442
Std. dev
0.02
Skewness
8.464
Kurtosis
103
Zeros
1,163
Outliers
3920 low · 392 high
Bilophila.unclassified
numeric
874
0
0 – 0.0806mean 0.0022
Min.
0
1st Qu.
0
Median
0.0002
Mean
0.0022
3rd Qu.
0.002
Max.
0.0806
Std. dev
0.0055
Skewness
6.625
Kurtosis
65.74
Zeros
710
Outliers
1950 low · 195 high
Escherichia.coli
numeric
963
0
0 – 0.8908mean 0.0164
Min.
0
1st Qu.
0
Median
0.0003
Mean
0.0164
3rd Qu.
0.0042
Max.
0.8908
Std. dev
0.0652
Skewness
7.543
Kurtosis
71.71
Zeros
620
Outliers
2680 low · 268 high
Escherichia.unclassified
numeric
630
0
0 – 0.1758mean 0.0007
Min.
0
1st Qu.
0
Median
0
Mean
0.0007
3rd Qu.
0.0002
Max.
0.1758
Std. dev
0.0054
Skewness
24.02
Kurtosis
704.8
Zeros
958
Outliers
2460 low · 246 high
Klebsiella.pneumoniae
numeric
172
0
0 – 0.542mean 0.0022
Min.
0
1st Qu.
0
Median
0
Mean
0.0022
3rd Qu.
0
Max.
0.542
Std. dev
0.0216
Skewness
17.47
Kurtosis
361.7
Zeros
1,424
Haemophilus.parainfluenzae
numeric
878
0
0 – 0.3268mean 0.0036
Min.
0
1st Qu.
0
Median
0.0001
Mean
0.0036
3rd Qu.
0.0016
Max.
0.3268
Std. dev
0.0167
Skewness
11.22
Kurtosis
159.5
Zeros
708
Outliers
2200 low · 220 high
Akkermansia.muciniphila
numeric
577
0
0 – 0.8157mean 0.0123
Min.
0
1st Qu.
0
Median
0
Mean
0.0123
3rd Qu.
0.0013
Max.
0.8157
Std. dev
0.0519
Skewness
8.652
Kurtosis
96.52
Zeros
1,017
Outliers
3220 low · 322 high
C2likevirus.unclassified
numeric
377
0
0 – 0.5593mean 0.0018
Min.
0
1st Qu.
0
Median
0
Mean
0.0018
3rd Qu.
0
Max.
0.5593
Std. dev
0.0185
Skewness
20.91
Kurtosis
550.2
Zeros
1,206
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-281,595 × 88Unchangedtsv · none
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3.222026-03-161,595 × 88Unchangedtsv · none
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3.212025-04-151,595 × 88Unchangedtsv · none
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3.202024-10-291,595 × 88Unchangedtsv · none
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3.192024-04-301,595 × 88Unchangedtsv · none
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3.182023-10-241,595 × 88Unchangedtsv · none
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3.172023-06-081,595 × 88Unchangedtsv · none
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3.162022-11-011,595 × 88Unchangedtsv · none
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3.152022-04-261,595 × 88Unchangedtsv · none
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3.142021-10-261,595 × 88Unchangedtsv · none
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3.132021-05-191,595 × 88Unchangedtsv · none
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3.122020-10-271,595 × 88Unchangedtsv · none
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3.112020-04-271,595 × 88Unchangedtsv · none
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degraded
3.102019-10-291,595 × 88–tsv · none
770 KB
degraded

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