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proteinGroups

Example of proteinGroups file from MaxQuant for TMT-10plex experiments.

Bundled with MSstatsTMT · exported, loads via data()

Class
data.table
data.table/data.frame
Dimensions
8 × 611
Missing
48
Format
rda · xz
version 2 · 13 KB
File
data/proteinGroups.rda
Fingerprint
54add8ec
Format documented
Yes
Source
Source not stated
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

A data.frame with a sort-order key for fast joins and lookups. After loading from an .rda file, the internal self-reference needs refreshing via setalloccol(). R object catalogue

Declared attributes
Other attributes

Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.

AttributeHoldsLength
.internal.selfrefNULL0
Columns
Column
Type
Distinct
Missing
Protein.IDs
character
8
0
Majority.protein.IDs
character
8
0
Peptide.counts..all.
integer
7
0
Peptide.counts..razor.unique.
integer
7
0
Peptide.counts..unique.
integer
7
0
Protein.names
character
8
0
Gene.names
character
8
0
Fasta.headers
logical
0
8
Number.of.proteins
integer
1
0
Peptides
integer
7
0
Razor...unique.peptides
integer
7
0
Unique.peptides
integer
7
0
Peptides.M1R1
integer
7
0
Peptides.M1R2
integer
7
0
Peptides.M1R3
integer
7
0
Peptides.M2R1
integer
7
0
Peptides.M2R2
integer
8
0
Peptides.M2R3
integer
6
0
Peptides.M3R1
integer
6
0
Peptides.M3R2
integer
6
0
Peptides.M3R3
integer
7
0
Peptides.M4R1
integer
7
0
Peptides.M4R2
integer
8
0
Peptides.M4R3
integer
7
0
Peptides.M5R1
integer
7
0
Peptides.M5R2
integer
8
0
Peptides.M5R3
integer
5
0
Razor...unique.peptides.M1R1
integer
7
0
Razor...unique.peptides.M1R2
integer
7
0
Razor...unique.peptides.M1R3
integer
7
0
Razor...unique.peptides.M2R1
integer
7
0
Razor...unique.peptides.M2R2
integer
8
0
Razor...unique.peptides.M2R3
integer
6
0
Razor...unique.peptides.M3R1
integer
6
0
Razor...unique.peptides.M3R2
integer
6
0
Razor...unique.peptides.M3R3
integer
7
0
Razor...unique.peptides.M4R1
integer
7
0
Razor...unique.peptides.M4R2
integer
8
0
Razor...unique.peptides.M4R3
integer
7
0
Razor...unique.peptides.M5R1
integer
7
0
Razor...unique.peptides.M5R2
integer
8
0
Razor...unique.peptides.M5R3
integer
5
0
Unique.peptides.M1R1
integer
7
0
Unique.peptides.M1R2
integer
7
0
Unique.peptides.M1R3
integer
7
0
Unique.peptides.M2R1
integer
7
0
Unique.peptides.M2R2
integer
8
0
Unique.peptides.M2R3
integer
6
0
Unique.peptides.M3R1
integer
6
0
Unique.peptides.M3R2
integer
6
0
Unique.peptides.M3R3
integer
7
0
Unique.peptides.M4R1
integer
7
0
Unique.peptides.M4R2
integer
8
0
Unique.peptides.M4R3
integer
7
0
Unique.peptides.M5R1
integer
7
0
Unique.peptides.M5R2
integer
8
0
Unique.peptides.M5R3
integer
5
0
Sequence.coverage....
numeric
8
0
Unique...razor.sequence.coverage....
numeric
8
0
Unique.sequence.coverage....
numeric
8
0
Mol..weight..kDa.
numeric
8
0
Sequence.length
integer
8
0
Sequence.lengths
integer
8
0
Q.value
numeric
2
0
Score
numeric
8
0
Reporter.intensity.corrected.0
numeric
8
0
Reporter.intensity.corrected.1
numeric
8
0
Reporter.intensity.corrected.2
numeric
8
0
Reporter.intensity.corrected.3
numeric
8
0
Reporter.intensity.corrected.4
numeric
8
0
Reporter.intensity.corrected.5
numeric
8
0
Reporter.intensity.corrected.6
numeric
8
0
Reporter.intensity.corrected.7
numeric
8
0
Reporter.intensity.corrected.8
numeric
8
0
Reporter.intensity.corrected.9
numeric
8
0
Reporter.intensity.0
numeric
8
0
Reporter.intensity.1
numeric
8
0
Reporter.intensity.2
numeric
8
0
Reporter.intensity.3
integer
8
0
Reporter.intensity.4
numeric
8
0
Reporter.intensity.5
numeric
8
0
Reporter.intensity.6
numeric
8
0
Reporter.intensity.7
numeric
8
0
Reporter.intensity.8
numeric
8
0
Reporter.intensity.9
integer
8
0
Reporter.intensity.count.0
integer
8
0
Reporter.intensity.count.1
integer
8
0
Reporter.intensity.count.2
integer
8
0
Reporter.intensity.count.3
integer
8
0
Reporter.intensity.count.4
integer
8
0
Reporter.intensity.count.5
integer
8
0
Reporter.intensity.count.6
integer
8
0
Reporter.intensity.count.7
integer
8
0
Reporter.intensity.count.8
integer
8
0
Reporter.intensity.count.9
integer
8
0
Reporter.intensity.corrected.0.M1R1
numeric
8
0
Reporter.intensity.corrected.1.M1R1
numeric
8
0
Reporter.intensity.corrected.2.M1R1
numeric
8
0
Reporter.intensity.corrected.3.M1R1
numeric
8
0
Reporter.intensity.corrected.4.M1R1
numeric
8
0
Reporter.intensity.corrected.5.M1R1
numeric
8
0
Reporter.intensity.corrected.6.M1R1
numeric
8
0
Reporter.intensity.corrected.7.M1R1
numeric
8
0
Reporter.intensity.corrected.8.M1R1
numeric
8
0
Reporter.intensity.corrected.9.M1R1
numeric
8
0
Reporter.intensity.corrected.0.M1R2
numeric
8
0
Reporter.intensity.corrected.1.M1R2
numeric
8
0
Reporter.intensity.corrected.2.M1R2
numeric
8
0
Reporter.intensity.corrected.3.M1R2
numeric
8
0
Reporter.intensity.corrected.4.M1R2
numeric
8
0
Reporter.intensity.corrected.5.M1R2
numeric
8
0
Reporter.intensity.corrected.6.M1R2
numeric
8
0
Reporter.intensity.corrected.7.M1R2
numeric
8
0
Reporter.intensity.corrected.8.M1R2
numeric
8
0
Reporter.intensity.corrected.9.M1R2
numeric
8
0
Reporter.intensity.corrected.0.M1R3
numeric
8
0
Reporter.intensity.corrected.1.M1R3
numeric
8
0
Reporter.intensity.corrected.2.M1R3
numeric
8
0
Reporter.intensity.corrected.3.M1R3
numeric
8
0
Reporter.intensity.corrected.4.M1R3
numeric
8
0
Reporter.intensity.corrected.5.M1R3
numeric
8
0
Reporter.intensity.corrected.6.M1R3
numeric
8
0
Reporter.intensity.corrected.7.M1R3
numeric
8
0
Reporter.intensity.corrected.8.M1R3
numeric
8
0
Reporter.intensity.corrected.9.M1R3
numeric
8
0
Reporter.intensity.corrected.0.M2R1
numeric
8
0
Reporter.intensity.corrected.1.M2R1
numeric
8
0
Reporter.intensity.corrected.2.M2R1
numeric
8
0
Reporter.intensity.corrected.3.M2R1
numeric
8
0
Reporter.intensity.corrected.4.M2R1
numeric
8
0
Reporter.intensity.corrected.5.M2R1
numeric
8
0
Reporter.intensity.corrected.6.M2R1
numeric
8
0
Reporter.intensity.corrected.7.M2R1
numeric
8
0
Reporter.intensity.corrected.8.M2R1
numeric
8
0
Reporter.intensity.corrected.9.M2R1
numeric
8
0
Reporter.intensity.corrected.0.M2R2
numeric
8
0
Reporter.intensity.corrected.1.M2R2
numeric
8
0
Reporter.intensity.corrected.2.M2R2
numeric
8
0
Reporter.intensity.corrected.3.M2R2
numeric
8
0
Reporter.intensity.corrected.4.M2R2
numeric
8
0
Reporter.intensity.corrected.5.M2R2
numeric
8
0
Reporter.intensity.corrected.6.M2R2
numeric
8
0
Reporter.intensity.corrected.7.M2R2
numeric
8
0
Reporter.intensity.corrected.8.M2R2
numeric
8
0
Reporter.intensity.corrected.9.M2R2
numeric
8
0
Reporter.intensity.corrected.0.M2R3
numeric
8
0
Reporter.intensity.corrected.1.M2R3
numeric
8
0
Reporter.intensity.corrected.2.M2R3
numeric
8
0
Reporter.intensity.corrected.3.M2R3
numeric
8
0
Reporter.intensity.corrected.4.M2R3
numeric
8
0
Reporter.intensity.corrected.5.M2R3
numeric
8
0
Reporter.intensity.corrected.6.M2R3
numeric
8
0
Reporter.intensity.corrected.7.M2R3
numeric
8
0
Reporter.intensity.corrected.8.M2R3
numeric
8
0
Reporter.intensity.corrected.9.M2R3
numeric
8
0
Reporter.intensity.corrected.0.M3R1
numeric
8
0
Reporter.intensity.corrected.1.M3R1
numeric
8
0
Reporter.intensity.corrected.2.M3R1
numeric
8
0
Reporter.intensity.corrected.3.M3R1
numeric
8
0
Reporter.intensity.corrected.4.M3R1
numeric
8
0
Reporter.intensity.corrected.5.M3R1
numeric
8
0
Reporter.intensity.corrected.6.M3R1
numeric
8
0
Reporter.intensity.corrected.7.M3R1
numeric
8
0
Reporter.intensity.corrected.8.M3R1
numeric
8
0
Reporter.intensity.corrected.9.M3R1
numeric
8
0
Reporter.intensity.corrected.0.M3R2
numeric
8
0
Reporter.intensity.corrected.1.M3R2
numeric
8
0
Reporter.intensity.corrected.2.M3R2
numeric
8
0
Reporter.intensity.corrected.3.M3R2
numeric
8
0
Reporter.intensity.corrected.4.M3R2
numeric
8
0
Reporter.intensity.corrected.5.M3R2
numeric
8
0
Reporter.intensity.corrected.6.M3R2
numeric
8
0
Reporter.intensity.corrected.7.M3R2
numeric
8
0
Reporter.intensity.corrected.8.M3R2
numeric
8
0
Reporter.intensity.corrected.9.M3R2
numeric
8
0
Reporter.intensity.corrected.0.M3R3
numeric
7
0
Reporter.intensity.corrected.1.M3R3
numeric
8
0
Reporter.intensity.corrected.2.M3R3
numeric
8
0
Reporter.intensity.corrected.3.M3R3
numeric
8
0
Reporter.intensity.corrected.4.M3R3
numeric
8
0
Reporter.intensity.corrected.5.M3R3
numeric
8
0
Reporter.intensity.corrected.6.M3R3
numeric
8
0
Reporter.intensity.corrected.7.M3R3
numeric
8
0
Reporter.intensity.corrected.8.M3R3
numeric
8
0
Reporter.intensity.corrected.9.M3R3
numeric
8
0
Reporter.intensity.corrected.0.M4R1
numeric
8
0
Reporter.intensity.corrected.1.M4R1
numeric
8
0
Reporter.intensity.corrected.2.M4R1
numeric
8
0
Reporter.intensity.corrected.3.M4R1
numeric
8
0
Reporter.intensity.corrected.4.M4R1
numeric
8
0
Reporter.intensity.corrected.5.M4R1
numeric
8
0
Reporter.intensity.corrected.6.M4R1
numeric
8
0
Reporter.intensity.corrected.7.M4R1
numeric
8
0
Reporter.intensity.corrected.8.M4R1
numeric
8
0
Reporter.intensity.corrected.9.M4R1
numeric
8
0
Reporter.intensity.corrected.0.M4R2
numeric
8
0
Reporter.intensity.corrected.1.M4R2
numeric
8
0
Reporter.intensity.corrected.2.M4R2
numeric
8
0
Reporter.intensity.corrected.3.M4R2
numeric
8
0
Reporter.intensity.corrected.4.M4R2
numeric
8
0
Reporter.intensity.corrected.5.M4R2
numeric
8
0
Reporter.intensity.corrected.6.M4R2
numeric
8
0
Reporter.intensity.corrected.7.M4R2
numeric
8
0
Reporter.intensity.corrected.8.M4R2
numeric
8
0
Reporter.intensity.corrected.9.M4R2
numeric
8
0
Reporter.intensity.corrected.0.M4R3
numeric
8
0
Reporter.intensity.corrected.1.M4R3
numeric
8
0
Reporter.intensity.corrected.2.M4R3
numeric
8
0
Reporter.intensity.corrected.3.M4R3
numeric
8
0
Reporter.intensity.corrected.4.M4R3
numeric
8
0
Reporter.intensity.corrected.5.M4R3
numeric
8
0
Reporter.intensity.corrected.6.M4R3
numeric
8
0
Reporter.intensity.corrected.7.M4R3
numeric
8
0
Reporter.intensity.corrected.8.M4R3
numeric
8
0
Reporter.intensity.corrected.9.M4R3
numeric
8
0
Reporter.intensity.corrected.0.M5R1
numeric
8
0
Reporter.intensity.corrected.1.M5R1
numeric
8
0
Reporter.intensity.corrected.2.M5R1
numeric
8
0
Reporter.intensity.corrected.3.M5R1
numeric
8
0
Reporter.intensity.corrected.4.M5R1
numeric
8
0
Reporter.intensity.corrected.5.M5R1
numeric
8
0
Reporter.intensity.corrected.6.M5R1
numeric
8
0
Reporter.intensity.corrected.7.M5R1
numeric
8
0
Reporter.intensity.corrected.8.M5R1
numeric
8
0
Reporter.intensity.corrected.9.M5R1
numeric
8
0
Reporter.intensity.corrected.0.M5R2
numeric
8
0
Reporter.intensity.corrected.1.M5R2
numeric
8
0
Reporter.intensity.corrected.2.M5R2
numeric
8
0
Reporter.intensity.corrected.3.M5R2
numeric
8
0
Reporter.intensity.corrected.4.M5R2
numeric
8
0
Reporter.intensity.corrected.5.M5R2
numeric
8
0
Reporter.intensity.corrected.6.M5R2
numeric
8
0
Reporter.intensity.corrected.7.M5R2
numeric
8
0
Reporter.intensity.corrected.8.M5R2
numeric
8
0
Reporter.intensity.corrected.9.M5R2
numeric
8
0
Reporter.intensity.corrected.0.M5R3
numeric
8
0
Reporter.intensity.corrected.1.M5R3
numeric
8
0
Reporter.intensity.corrected.2.M5R3
numeric
8
0
Reporter.intensity.corrected.3.M5R3
numeric
8
0
Reporter.intensity.corrected.4.M5R3
numeric
8
0
Reporter.intensity.corrected.5.M5R3
numeric
8
0
Reporter.intensity.corrected.6.M5R3
numeric
8
0
Reporter.intensity.corrected.7.M5R3
numeric
8
0
Reporter.intensity.corrected.8.M5R3
numeric
8
0
Reporter.intensity.corrected.9.M5R3
numeric
8
0
Reporter.intensity.0.M1R1
numeric
8
0
Reporter.intensity.1.M1R1
numeric
8
0
Reporter.intensity.2.M1R1
numeric
8
0
Reporter.intensity.3.M1R1
numeric
8
0
Reporter.intensity.4.M1R1
numeric
8
0
Reporter.intensity.5.M1R1
numeric
8
0
Reporter.intensity.6.M1R1
numeric
8
0
Reporter.intensity.7.M1R1
numeric
8
0
Reporter.intensity.8.M1R1
numeric
8
0
Reporter.intensity.9.M1R1
numeric
8
0
Reporter.intensity.0.M1R2
numeric
8
0
Reporter.intensity.1.M1R2
numeric
8
0
Reporter.intensity.2.M1R2
numeric
8
0
Reporter.intensity.3.M1R2
numeric
8
0
Reporter.intensity.4.M1R2
numeric
8
0
Reporter.intensity.5.M1R2
numeric
8
0
Reporter.intensity.6.M1R2
numeric
8
0
Reporter.intensity.7.M1R2
numeric
8
0
Reporter.intensity.8.M1R2
numeric
8
0
Reporter.intensity.9.M1R2
numeric
8
0
Reporter.intensity.0.M1R3
numeric
8
0
Reporter.intensity.1.M1R3
numeric
8
0
Reporter.intensity.2.M1R3
numeric
8
0
Reporter.intensity.3.M1R3
numeric
8
0
Reporter.intensity.4.M1R3
numeric
8
0
Reporter.intensity.5.M1R3
numeric
8
0
Reporter.intensity.6.M1R3
numeric
8
0
Reporter.intensity.7.M1R3
numeric
8
0
Reporter.intensity.8.M1R3
numeric
8
0
Reporter.intensity.9.M1R3
numeric
8
0
Reporter.intensity.0.M2R1
numeric
8
0
Reporter.intensity.1.M2R1
numeric
8
0
Reporter.intensity.2.M2R1
numeric
8
0
Reporter.intensity.3.M2R1
numeric
8
0
Reporter.intensity.4.M2R1
numeric
8
0
Reporter.intensity.5.M2R1
numeric
8
0
Reporter.intensity.6.M2R1
numeric
8
0
Reporter.intensity.7.M2R1
numeric
8
0
Reporter.intensity.8.M2R1
numeric
8
0
Reporter.intensity.9.M2R1
numeric
8
0
Reporter.intensity.0.M2R2
numeric
8
0
Reporter.intensity.1.M2R2
numeric
8
0
Reporter.intensity.2.M2R2
numeric
8
0
Reporter.intensity.3.M2R2
numeric
8
0
Reporter.intensity.4.M2R2
numeric
8
0
Reporter.intensity.5.M2R2
numeric
8
0
Reporter.intensity.6.M2R2
numeric
8
0
Reporter.intensity.7.M2R2
numeric
8
0
Reporter.intensity.8.M2R2
numeric
8
0
Reporter.intensity.9.M2R2
numeric
8
0
Reporter.intensity.0.M2R3
numeric
8
0
Reporter.intensity.1.M2R3
numeric
8
0
Reporter.intensity.2.M2R3
numeric
8
0
Reporter.intensity.3.M2R3
numeric
8
0
Reporter.intensity.4.M2R3
numeric
8
0

Past 512 columns the profile keeps the name, the type and these two counts for every column and stops there, so the per-column statistics were never taken rather than taken and lost. Showing the first 300 of 611 columns.

The same data in 1 other package

This data is identical to the data these packages carry, down to the byte.

MSstatsShiny

The structure fingerprint found nothing beyond this list.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-288 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.222025-10-298 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.212025-04-158 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.202025-03-058 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.192024-05-208 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.182023-10-248 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.172023-04-258 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.162023-02-268 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.152022-09-128 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.142022-02-188 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.132021-06-148 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.122020-12-208 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.112020-10-138 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.102020-04-148 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.92019-05-048 × 611Unchangedrda · xz
version 2 · 13 KB
exact
3.82019-02-258 × 611–rda · xz
version 2 · 13 KB
exact

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