input.pd
Example of output from PDtoMSstatsTMTFormat function
Bundled with MSstatsTMT · exported, loads via data()
Class
MSstatsValidated
Elements
11
Missing
0
Format
rda · gzip
version 3 · 190 KB
File
data/input.pd.rda
Fingerprint
8743b28c
Format documented
Yes
Source
Source not stated
Structure
Distinct
11
Element length
20,360 – 20,360
Total length
223,960
Elements
Element
Type
Distinct
Missing
Summary
ProteinName
character
10
0
6 characters
PeptideSequence
character
228
0
15 – 49 characters
Charge
character
4
0
1 characters
PSM
character
305
0
17 – 51 characters
Mixture
character
5
0
8 characters
TechRepMixture
character
3
0
1 characters
Run
character
15
0
43 characters
Channel
character
10
0
3 – 4 characters
BioReplicate
character
5
0
1 – 5 characters
Condition
factor
5
0
0.1254,0720.54,0720.6674,07214,072Norm4,072
Intensitynumeric20,120180340.307 – 1.38474e+7mean 1.659e+5
Min.
340.307
1st Qu.
12618.7
Median
41074.9
Mean
165917
3rd Qu.
122486
Max.
1.38474e+7
Std. dev
554122
Skewness
11.68
Kurtosis
191
Outliers
2,3510 low · 2351 high
Longest gap
6
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | Value |
|---|---|---|---|
| .S3Class | character | 1 | data.frame |
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.22 | 2025-10-29 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.21 | 2025-04-15 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.20 | 2025-03-05 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.19 | 2024-05-20 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.18 | 2023-10-24 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.17 | 2023-04-25 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.16 | 2023-02-26 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.15 | 2022-09-12 | 11 elements | Unchanged | rda · gzip version 3 · 190 KB | exact |
| 3.14 | 2022-02-18 | 11 elements | Data changed Class data.frame → MSstatsValidated · Missing 180 → 0 | rda · gzip version 3 · 190 KB | exact |
| 3.13 | 2021-06-14 | 20,360 × 11 | Unchanged | rda · gzip version 3 · 175 KB | exact |
| 3.12 | 2020-12-20 | 20,360 × 11 | Unchanged | rda · gzip version 3 · 175 KB | exact |
| 3.11 | 2020-10-13 | 20,360 × 11 | Unchanged | rda · gzip version 3 · 175 KB | exact |
| 3.10 | 2020-04-14 | 20,360 × 11 | Unchanged | rda · gzip version 3 · 175 KB | exact |
| 3.9 | 2019-05-04 | 20,360 × 11 | Data changed Dimensions 20,360 × 10 → 20,360 × 11 | rda · gzip version 3 · 175 KB | exact |
| 3.8 | 2019-02-25 | 20,360 × 10 | – | rda · gzip version 2 · 174 KB | exact |
Dimensions is the row and column count. Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Missing is how many values were recorded as absent.