tmt_pd_model
Example of TMT dataset modeled using MSstatsTMT `groupComparisonTMT` function.
Bundled with MSstatsShiny · exported, loads via data()
Class
list
Elements
3
Missing
0
Format
rda · xz
version 3 · 68 KB
File
data/tmt_pd_model.rda
Fingerprint
dbd865a1
Format documented
Yes
Source
Source not stated
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
3
Nesting depth
2
Element length
0 – 10
Total length
18
Nested rows
10
Nested columns
8
Elements
Element
Type
Distinct
Missing
Summary
ComparisonResultlist80nested·10 rows nested
Element length
10 – 10
Total length
80
Nested rows
10
What is inside it
Element
Type
Distinct
Missing
Summary
Proteinfactor100P044061P065761P122771P239191P319471Q152331+4 more
P044061P065761P122771P239191P319471Q152331+4 more
Levels
10
Used
10
Rows per level
P044061P065761P122771P239191P319471Q152331Q161811Q9NSD91Q9UGP81Q9Y4501
Label
character
1
0
7 characters
log2FCnumeric100-0.0302 – 0.0717mean 0.0153
Min.
-0.0302
1st Qu.
0.0002
Median
0.0082
Mean
0.0153
3rd Qu.
0.0339
Max.
0.0717
Std. dev
0.0286
Skewness
0.3598
Kurtosis
-0.7176
SEnumeric1000.022 – 0.0476mean 0.0318
Min.
0.022
1st Qu.
0.025
Median
0.0299
Mean
0.0318
3rd Qu.
0.0361
Max.
0.0476
Std. dev
0.0087
Skewness
0.4784
Kurtosis
-1.362
DFnumeric1009.4625 – 102mean 29.44
Min.
9.4625
1st Qu.
11.1439
Median
11.4845
Mean
29.4402
3rd Qu.
13.342
Max.
102
Std. dev
38.26
Skewness
1.278
Kurtosis
-0.3713
Outliers
20 low · 2 high
pvaluenumeric1000.1352 – 0.9726mean 0.5688
Min.
0.1352
1st Qu.
0.3762
Median
0.5602
Mean
0.5688
3rd Qu.
0.8179
Max.
0.9726
Std. dev
0.3041
Skewness
-0.1052
Kurtosis
-1.726
adj.pvaluenumeric300.8416 – 0.9726mean 0.9172
Min.
0.8416
1st Qu.
0.8754
Median
0.924
Mean
0.9172
3rd Qu.
0.9726
Max.
0.9726
Std. dev
0.0596
Skewness
-0.1118
Kurtosis
-2.039
issuelogical0100 true·0 false
Longest missing run
10
Leading
10
Trailing
10
ModelQC
NULL
–
–
empty
FittedModellist10lmerModLmerTest
Element class
lmerModLmerTest
Element length
0 – 0
Total length
0
Every nested table has these 8 columns
- Protein
- Label
- log2FC
- SE
- DF
- pvalue
- adj.pvalue
- issue
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.22 | 2026-01-22 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.21 | 2025-04-15 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.20 | 2024-10-29 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.19 | 2024-06-01 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.18 | 2024-03-04 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.17 | 2023-09-08 | 3 elements | Unchanged | rda · xz version 3 · 68 KB | exact |
| 3.16 | 2023-03-02 | 3 elements | – | rda · xz version 3 · 68 KB | exact |