edge
Examples of array-CGH data with spatial artifacts
Bundled with MANOR · exported, loads via data()
Class
arrayCGH
Elements
4
Missing
0
Format
rda · xz
version 2 · 277 KB
File
data/spatial.RData
Fingerprint
1df0cbcf
Format documented
Yes
Source
Institut Curie, manor@curie.fr.
Structure
Distinct
4
Nesting depth
2
Element length
1 – 10
Total length
17
Nested rows
9,856
Nested columns
10
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
arrayValueslist100nested·7,392 rows nested
Element length
7,392 – 7,392
Total length
73,920
Nested rows
7,392
What is inside it
Element
Type
Distinct
Missing
Summary
Colnumeric8401 – 84mean 42.5
Min.
1
1st Qu.
21.75
Median
42.5
Mean
42.5
3rd Qu.
63.25
Max.
84
Std. dev
24.2486
Skewness
2.91e-15
Kurtosis
-1.201
Rownumeric8801 – 88mean 44.5
Min.
1
1st Qu.
22.75
Median
44.5
Mean
44.5
3rd Qu.
66.25
Max.
88
Std. dev
25.4035
Skewness
-3.701e-16
Kurtosis
-1.201
Order
ascending
LogRationumeric1,204210-1.377 – 1.786mean 0.9383
Min.
-1.377
1st Qu.
0.895
Median
0.988
Mean
0.9383
3rd Qu.
1.046
Max.
1.786
Std. dev
0.2529
Skewness
-1.305
Kurtosis
5.734
Outliers
1,230827 low · 403 high
Longest gap
9
RefForeinteger2,23637376 – 4960mean 1730
Min.
376
1st Qu.
1350
Median
1688
Mean
1729.68
3rd Qu.
2070
Max.
4960
Std. dev
566.583
Skewness
0.4329
Kurtosis
0.7365
Outliers
970 low · 97 high
Longest gap
3
RefBackinteger9437363 – 513mean 399.2
Min.
363
1st Qu.
393
Median
399
Mean
399.24
3rd Qu.
404
Max.
513
Std. dev
10.0263
Skewness
1.433
Kurtosis
8.88
Outliers
27754 low · 223 high
Longest gap
3
DapiForeinteger4,44537712 – 15775mean 6784
Min.
712
1st Qu.
5599.5
Median
6875
Mean
6783.94
3rd Qu.
8057.5
Max.
15775
Std. dev
1916.67
Skewness
-0.2699
Kurtosis
0.9264
Outliers
185140 low · 45 high
Longest gap
3
DapiBackinteger83037528 – 1789mean 865.4
Min.
528
1st Qu.
752
Median
827
Mean
865.418
3rd Qu.
943
Max.
1789
Std. dev
170.152
Skewness
1.881
Kurtosis
5.779
Outliers
2550 low · 255 high
Longest gap
3
SpotFlaginteger20-1 – 0mean -0.005
Min.
-1
1st Qu.
0
Median
0
Mean
-0.005
3rd Qu.
0
Max.
0
Std. dev
0.0706
Skewness
-14.03
Kurtosis
194.7
Zeros
7,355
ScaledLogRationumeric701210-1.733 – 0.916mean -0.0035
Min.
-1.733
1st Qu.
-0.051
Median
0
Mean
-0.0035
3rd Qu.
0.044
Max.
0.916
Std. dev
0.1277
Skewness
-1.425
Kurtosis
27.41
Zeros
97
Outliers
453242 low · 211 high
Longest gap
9
PosOrderinteger2,46401 – 2464mean 1232
Min.
1
1st Qu.
616.75
Median
1232.5
Mean
1232.5
3rd Qu.
1848.25
Max.
2464
Std. dev
711.344
Skewness
2.656e-15
Kurtosis
-1.2
arrayDesignnumeric304 – 22mean 12.75
Min.
4
1st Qu.
4
Median
12.5
Mean
12.75
3rd Qu.
21.25
Max.
22
Std. dev
10.1119
Skewness
0.0032
Kurtosis
-2.434
Order
ascending
cloneValueslist20integer·2,464 rows nested
Element class
integer
Element length
2,464 – 2,464
Total length
4,928
Nested rows
2,464
What is inside it
Element
Type
Distinct
Missing
Summary
PosOrderinteger2,46401 – 2464mean 1232
Min.
1
1st Qu.
616.75
Median
1232.5
Mean
1232.5
3rd Qu.
1848.25
Max.
2464
Std. dev
711.44
Skewness
5.876e-17
Kurtosis
-1.202
Order
ascending
Chromosomeinteger2511 – 25mean 9.641
Min.
1
1st Qu.
4
Median
9
Mean
9.6407
3rd Qu.
14
Max.
25
Std. dev
6.1466
Skewness
0.4942
Kurtosis
-0.6966
Order
ascending
id.rep
character
1
0
8 characters
The nested tables do not share one set of columns, so there is no single schema to show.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.22 | 2025-10-29 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.21 | 2025-04-15 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.20 | 2024-10-29 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.19 | 2024-04-30 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.18 | 2023-10-24 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.17 | 2023-04-25 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.16 | 2022-11-01 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.15 | 2022-04-26 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.14 | 2021-10-26 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.13 | 2021-05-19 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.12 | 2020-10-27 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.11 | 2020-04-27 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.10 | 2019-10-29 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.9 | 2019-05-02 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.8 | 2018-10-30 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.7 | 2018-05-11 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.6 | 2017-10-30 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.5 | 2017-04-24 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.4 | 2016-10-17 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.3 | 2016-05-03 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.2 | 2015-10-13 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.1 | 2015-04-16 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 3.0 | 2014-10-13 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 2.14 | 2014-04-11 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 2.13 | 2013-10-14 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 2.12 | 2013-04-03 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 2.11 | 2012-10-01 | 4 elements | Unchanged | rda · xz version 2 · 277 KB | exact |
| 2.10 | 2012-03-30 | 4 elements | Repackaged | rda · xz version 2 · 277 KB | exact |
| 2.9 | 2011-10-31 | 4 elements | Unchanged | rda · gzip version 2 · 645 KB | exact |
| 2.8 | 2011-04-14 | 4 elements | Data changed Class data.frame → arrayCGH · Missing 6 → 0 | rda · gzip version 2 · 645 KB | exact |
| 2.7 | 2010-10-18 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.6 | 2010-05-26 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.5 | 2009-10-27 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.4 | 2009-04-20 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.3 | 2008-10-21 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.2 | 2008-04-30 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.1 | 2007-10-03 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 2.0 | 2007-04-24 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 1.9 | 2006-12-15 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 1.8 | 2006-04-25 | 100 × 15 | Unchanged | tab · none 5.7 KB | degraded |
| 1.7 | 2005-10-12 | 100 × 15 | – | tab · none 5.7 KB | degraded |
Class is the chain of classes R records on the object, most specific first. The facts above give the short name for the same chain. Missing is how many values were recorded as absent.