integration_matrices
Example of imported multi-quantification integration matrices.
Bundled with ISAnalytics · exported, loads via data()
Class
data.table
data.table/data.frame
Dimensions
1,689 × 8
Missing
0
Format
rda · xz
version 3 · 26 KB
File
data/integration_matrices.RData
Fingerprint
7ba17c87
About this object
A data.frame with a key. The key is a sort order held with the table, and it is what makes joins and lookups fast, so it survives being saved and describes the file rather than a session. Loaded from an rda its internal self-reference is stale, so the first assignment by reference warns unless the package calls setalloccol() when it loads. R object catalogue
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | |
|---|---|---|---|
| .internal.selfref | NULL | 0 |
Columns
Column
Type
Distinct
Missing
Summary
chr
character
24
0
1 – 2 characters
integration_locusnumeric5610136067 – 242428144mean 6.372e+7
Min.
136067
1st Qu.
27058748
Median
52746241
Mean
6.37206e+7
3rd Qu.
89692350
Max.
242428144
Std. dev
4.9894e+7
Skewness
1.081
Kurtosis
1.002
Outliers
440 low · 44 high
strand
character
2
0
1 characters
GeneName
character
501
0
3 – 22 characters
GeneStrand
character
2
0
1 characters
CompleteAmplificationID
character
53
0
66 – 68 characters
seqCountnumeric75401 – 35374mean 750
Min.
1
1st Qu.
8
Median
115
Mean
749.982
3rd Qu.
587
Max.
35374
Std. dev
2387.6
Skewness
7.072
Kurtosis
61.36
Outliers
1770 low · 177 high
fragmentEstimatenumeric1,67601.0001 – 102.946mean 6.397
Min.
1.0001
1st Qu.
1.0015
Median
3.0077
Mean
6.3969
3rd Qu.
4.0185
Max.
102.946
Std. dev
14.2193
Skewness
4.326
Kurtosis
19.41
Outliers
1820 low · 182 high
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.22 | 2026-01-27 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.21 | 2025-04-15 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.20 | 2024-12-05 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.19 | 2024-04-30 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.18 | 2023-10-24 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.17 | 2023-07-24 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.16 | 2023-04-03 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.15 | 2022-05-23 | 1,689 × 8 | Unchanged | rda · xz version 3 · 26 KB | exact |
| 3.14 | 2022-01-13 | 1,689 × 8 | – | rda · xz version 3 · 26 KB | exact |