NHEK.chr22
Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
Bundled with HiCcompare · exported, loads via data()
Class
data.frame
Dimensions
2,508 × 3
Missing
0
Format
rda · xz
version 2 · 4.6 KB
File
data/NHEK.chr22.rda
Fingerprint
97e5106a
Format documented
Yes
Source
Data from the Aiden Lab. See their website at https://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
integer71016000000 – 51000000mean 2.789e+7
Min.
16000000
1st Qu.
21000000
Median
26500000
Mean
2.78894e+7
3rd Qu.
34000000
Max.
51000000
Std. dev
8.3497e+6
Skewness
0.5641
Kurtosis
-0.6026
integer71016000000 – 51000000mean 3.945e+7
Min.
16000000
1st Qu.
33500000
Median
41000000
Mean
3.94456e+7
3rd Qu.
46500000
Max.
51000000
Std. dev
8.36924e+6
Skewness
-0.5722
Kurtosis
-0.585
Order
ascending
numeric60801 – 37130mean 1041
Min.
1
1st Qu.
58
Median
105
Mean
1041.02
3rd Qu.
171.25
Max.
37130
Std. dev
4565.95
Skewness
5.78
Kurtosis
33.23
Outliers
3300 low · 330 high
Same structure in 1 other dataset
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.22 | 2025-10-29 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.21 | 2025-04-15 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.20 | 2024-10-29 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.19 | 2024-04-30 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.18 | 2023-10-24 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.17 | 2023-06-04 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.16 | 2022-11-01 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.15 | 2022-04-26 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.14 | 2021-10-26 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.13 | 2021-05-19 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.12 | 2020-10-27 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.11 | 2020-04-27 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.10 | 2019-10-29 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.9 | 2019-05-02 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.8 | 2018-10-30 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.7 | 2018-04-30 | 2,508 × 3 | Unchanged | rda · xz version 2 · 4.6 KB | exact |
| 3.6 | 2017-10-30 | 2,508 × 3 | – | rda · xz version 2 · 4.6 KB | exact |