HMEC.chr10
Hi-C data from HMEC cell line - chromosome 10 at 500kb resolution
Bundled with HiCcompare · exported, loads via data()
Class
data.frame
Dimensions
35,386 × 3
Missing
0
Format
rda · xz
version 2 · 38 KB
File
data/HMEC.chr10.rda
Fingerprint
66b5991c
Format documented
Yes
Source
Data from the Aiden Lab. See their website at https://www.aidenlab.org/ Or the the GEO link to download the data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
integer26600 – 135000000mean 4.545e+7
Min.
0
1st Qu.
17500000
Median
38500000
Mean
4.54476e+7
3rd Qu.
69000000
Max.
135000000
Std. dev
3.25076e+7
Skewness
0.5315
Kurtosis
-0.6905
Zeros
266
integer26700 – 135500000mean 9.059e+7
Min.
0
1st Qu.
68500000
Median
96000000
Mean
9.05857e+7
3rd Qu.
117500000
Max.
135500000
Std. dev
3.18686e+7
Skewness
-0.606
Kurtosis
-0.5131
Zeros
1
Order
ascending
numeric1,46601 – 41164mean 256.8
Min.
1
1st Qu.
12
Median
24
Mean
256.755
3rd Qu.
60
Max.
41164
Std. dev
1983.84
Skewness
12.29
Kurtosis
163.7
Outliers
3,8030 low · 3803 high
Same structure in 1 other dataset
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.22 | 2025-10-29 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.21 | 2025-04-15 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.20 | 2024-10-29 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.19 | 2024-04-30 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.18 | 2023-10-24 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.17 | 2023-06-04 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.16 | 2022-11-01 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.15 | 2022-04-26 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.14 | 2021-10-26 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.13 | 2021-05-19 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.12 | 2020-10-27 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.11 | 2020-04-27 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.10 | 2019-10-29 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.9 | 2019-05-02 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.8 | 2018-10-30 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.7 | 2018-04-30 | 35,386 × 3 | Unchanged | rda · xz version 2 · 38 KB | exact |
| 3.6 | 2017-10-30 | 35,386 × 3 | – | rda · xz version 2 · 38 KB | exact |