example.data

example datasets for documentation

Bundled with GeneNetworkBuilder · exported, loads via data()

Class

list

Elements

Missing

Format

rda · gzip

version 2 · 183 KB

File

data/example.data.rda

Fingerprint

e69247f8

About this object

The container everything else is built on. What matters about a stored list is usually what is inside it, since a list of three elements can hold thousands of rows. R object catalogue

Structure

Distinct

Nesting depth

Element length

2 – 6,538

Total length

6,562

Nested rows

1,399

Nested columns

Nested schema

varies between elements

Elements

Element

Type

Distinct

Missing

Summary

example.microarrayData

list

nested·882 rows nested

Element length

882 – 882

Total length

7,938

Nested rows

882

What is inside it

Element

Type

Distinct

Missing

Summary

character

882

9 – 11 characters

logFC

numeric

882

-3.6149 – 3.7454mean 0.0417

Min.

-3.6149

1st Qu.

-0.0995

Median

0.0405

Mean

0.0417

3rd Qu.

0.2284

Max.

3.7454

Std. dev

0.4088

Skewness

-0.0472

Kurtosis

19.89

Outliers

5740 low · 17 high

AveExpr

numeric

882

3.5161 – 13.5635mean 6.771

Min.

3.5161

1st Qu.

5.13

Median

6.5516

Mean

6.7713

3rd Qu.

8.2437

Max.

13.5635

Std. dev

1.9583

Skewness

0.5235

Kurtosis

-0.3518

Outliers

40 low · 4 high

numeric

882

-26.297 – 27.542mean 0.4584

Min.

-26.297

1st Qu.

-1.0243

Median

0.4112

Mean

0.4584

3rd Qu.

2.3147

Max.

27.542

Std. dev

3.9505

Skewness

-0.0612

Kurtosis

9.54

Outliers

6439 low · 25 high

P.Value

numeric

882

6.3923e-11 – 0.9964mean 0.2722

Min.

6.3923e-11

1st Qu.

0.0059

Median

0.1389

Mean

0.2722

3rd Qu.

0.4965

Max.

0.9964

Std. dev

0.3034

Skewness

0.8477

Kurtosis

-0.6198

adj.P.Val

numeric

864

2.9516e-8 – 0.9981mean 0.3714

Min.

2.9516e-8

1st Qu.

0.025

Median

0.2965

Mean

0.3714

3rd Qu.

0.6934

Max.

0.9981

Std. dev

0.3421

Skewness

0.3697

Kurtosis

-1.389

numeric

882

-7.7156 – 15.7542mean -4.771

Min.

-7.7156

1st Qu.

-7.4497

Median

-6.4572

Mean

-4.7707

3rd Qu.

-3.3801

Max.

15.7542

Std. dev

3.8227

Skewness

1.972

Kurtosis

4.579

Outliers

510 low · 51 high

genes

character

645

6 – 12 characters

symbols

character

645

5 – 11 characters

ce.bind

list

factor·4 rows nested

Element class

factor

Element length

4 – 4

Total length

Nested rows

What is inside it

Element

Type

Distinct

Missing

Summary

from

factor

WBGene000009124

factor

WBGene000036021WBGene000036561WBGene000193271WBGene000215521

hs.bind

character

3,270

1 – 9 characters

hs.exprData

list

nested·489 rows nested

Element length

489 – 489

Total length

1,956

Nested rows

489

What is inside it

Element

Type

Distinct

Missing

Summary

character

489

6 – 14 characters

symbols

character

489

1 – 9 characters

logFC

numeric

484

-5.6439 – 5.5236mean 0.0008

Min.

-5.6439

1st Qu.

-1.3094

Median

-1.0095

Mean

0.0008

3rd Qu.

1.2629

Max.

5.5236

Std. dev

1.7325

Skewness

0.1707

Kurtosis

-0.2192

Outliers

52 low · 3 high

P.Value

numeric

0 – 0.0001mean 1.74e-6

Min.

1st Qu.

Median

Mean

1.7397e-6

3rd Qu.

Max.

0.0001

Std. dev

Skewness

7.517

Kurtosis

61.32

Zeros

414

ce.exprData

list

nested·24 rows nested

Element length

24 – 24

Total length

216

Nested rows

What is inside it

Element

Type

Distinct

Missing

Summary

factor

171923_x_at1174175_at1175678_at1175826_s_at1175950_s_at1177796_at1+22,542 more

Levels

22,548

Used

Unused

22,524

Rows per level, the 24 commonest of 22,548

171923_x_at1174175_at1175678_at1175826_s_at1175950_s_at1177796_at1179266_at1180410_at1181230_at1181817_s_at1182128_at1182492_at1183828_at1184411_at1184853_at1186390_at1187598_at1189116_at1189304_at1189583_at1192006_s_at1192924_s_at1193016_s_at1193328_at1

logFC

numeric

-3.6149 – 5.5789mean -0.3954

Min.

-3.6149

1st Qu.

-1.4417

Median

-1.1396

Mean

-0.3954

3rd Qu.

1.2224

Max.

5.5789

Std. dev

1.8893

Skewness

1.212

Kurtosis

1.792

Outliers

10 low · 1 high

AveExpr

numeric

4.3097 – 9.7934mean 7.326

Min.

4.3097

1st Qu.

6.3247

Median

7.3286

Mean

7.3258

3rd Qu.

8.3702

Max.

9.7934

Std. dev

1.489

Skewness

-0.1273

Kurtosis

-0.9382

numeric

-26.297 – 44.7861mean -4.053

Min.

-26.297

1st Qu.

-13.4224

Median

-10.5846

Mean

-4.053

3rd Qu.

8.7782

Max.

44.7861

Std. dev

15.6777

Skewness

1.245

Kurtosis

1.444

Outliers

10 low · 1 high

P.Value

numeric

4.6343e-13 – 5.9223e-6mean 1.137e-6

Min.

4.6343e-13

1st Qu.

5.3344e-8

Median

3.2487e-7

Mean

1.1371e-6

3rd Qu.

1.1229e-6

Max.

5.9223e-6

Std. dev

1.7847e-6

Skewness

1.601

Kurtosis

1.242

Outliers

40 low · 4 high

adj.P.Val

numeric

1.165e-9 – 0.0001mean 0

Min.

1.165e-9

1st Qu.

3.7959e-6

Median

Mean

3rd Qu.

Max.

0.0001

Std. dev

Skewness

1.372

Kurtosis

0.5398

Outliers

30 low · 3 high

numeric

3.9324 – 20.101mean 8.013

Min.

3.9324

1st Qu.

5.7965

Median

7.0283

Mean

8.0129

3rd Qu.

8.9562

Max.

20.101

Std. dev

3.76

Skewness

1.551

Kurtosis

2.369

Outliers

20 low · 2 high

genes

factor

Cel.80282Cel.83392Cel.113381Cel.113921Cel.113941Cel.12941+17,135 more

Levels

17,141

Used

Unused

17,119

Rows per level, the 22 commonest of 17,141

Cel.80282Cel.83392Cel.113381Cel.113921Cel.113941Cel.12941Cel.135571Cel.153961Cel.158791Cel.164341Cel.175301Cel.183781Cel.199481Cel.201451Cel.250581Cel.265731Cel.30491Cel.328781Cel.48911Cel.6671Cel.69211Cel.78641

symbols

character

14 characters

The nested tables do not share one set of columns, so there is no single schema to show.

Version history

Version	Released	Rows × Cols	Change	Stored as	Confidence
3.23	2026-04-28	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.22	2025-10-29	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.21	2025-04-15	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.20	2024-10-29	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.19	2024-04-30	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.18	2023-10-24	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.17	2023-04-25	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.16	2022-11-01	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.15	2022-04-26	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.14	2021-12-02	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.13	2021-05-19	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.12	2020-10-27	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.11	2020-04-27	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.10	2020-01-18	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.9	2019-05-08	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.8	2019-04-08	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.7	2018-04-30	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.6	2017-10-30	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.5	2017-05-05	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.4	2016-10-17	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.3	2016-09-26	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.2	2015-10-13	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.1	2015-04-16	–	Unchanged	rda · gzip version 2 · 183 KB	exact
3.0	2014-10-13	–	Unchanged	rda · gzip version 2 · 183 KB	exact
2.14	2014-07-23	–	Unchanged	rda · gzip version 2 · 183 KB	exact
2.13	2014-02-04	–	Unchanged	rda · gzip version 2 · 183 KB	exact
2.12	2013-04-03	–	Unchanged	rda · gzip version 2 · 183 KB	exact
2.11	2012-12-11	–	–	rda · gzip version 2 · 183 KB	exact