AlvMac_results
Sample output from the `GO_analyse()` function on an RNAseq experiment.
Bundled with GOexpress · exported, loads via data()
Class
list
Elements
9
Missing
0
Format
rda · xz
version 2 · 525 KB
File
data/AlvMac_results.RData
Fingerprint
4b8b338c
Source
Source data are part of a publication in review.
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
9
Nesting depth
2
Element length
0 – 7
Total length
18
Nested rows
205,016
Nested columns
7
Nested schema
varies between elements
Elements
Element
Type
Distinct
Missing
Summary
GOlist70nested·13,302 rows nested
Element length
13,302 – 13,302
Total length
93,114
Nested rows
13,302
What is inside it
Element
Type
Distinct
Missing
Summary
go_id
character
13,302
0
10 characters
ave_ranknumeric52802 – 101mean 100.6
Min.
2
1st Qu.
101
Median
101
Mean
100.574
3rd Qu.
101
Max.
101
Std. dev
3.9184
Skewness
-15.59
Kurtosis
292.9
Order
ascending
ave_scorenumeric57700 – 3.462mean 0.006
Min.
0
1st Qu.
0
Median
0
Mean
0.006
3rd Qu.
0
Max.
3.462
Std. dev
0.0649
Skewness
29.65
Kurtosis
1317
Zeros
12,616
total_countnumeric26201 – 8787mean 14.4
Min.
1
1st Qu.
1
Median
3
Mean
14.4049
3rd Qu.
7
Max.
8787
Std. dev
127.614
Skewness
39.48
Kurtosis
2140
Outliers
1,4880 low · 1488 high
data_countnumeric1800 – 50mean 0.0884
Min.
0
1st Qu.
0
Median
0
Mean
0.0884
3rd Qu.
0
Max.
50
Std. dev
0.7778
Skewness
34.85
Kurtosis
1787
Zeros
12,616
name_1006
character
13,302
0
4 – 193 characters
namespace_1003
character
3
0
18 characters
mappinglist20character·191,614 rows nested
Element class
character
Element length
191,614 – 191,614
Total length
383,228
Nested rows
191,614
What is inside it
Element
Type
Distinct
Missing
Summary
gene_id
character
18,216
0
18 characters
go_id
character
13,302
0
10 characters
geneslist40nested·100 rows nested
Element length
100 – 100
Total length
400
Nested rows
100
What is inside it
Element
Type
Distinct
Missing
Summary
Scorenumeric10000.2739 – 7.4903mean 0.7734
Min.
0.2739
1st Qu.
0.4454
Median
0.5608
Mean
0.7734
3rd Qu.
0.7835
Max.
7.4903
Std. dev
0.8559
Skewness
5.541
Kurtosis
37.03
Outliers
60 low · 6 high
Order
descending
Rankinteger10001 – 100mean 50.5
Min.
1
1st Qu.
25.75
Median
50.5
Mean
50.5
3rd Qu.
75.25
Max.
100
Std. dev
29.0115
Skewness
7.994e-17
Kurtosis
-1.236
Order
ascending
external_gene_name
character
91
0
0 – 10 characters·8 blank
description
character
98
0
0 – 158 characters·3 blank
factor
character
1
0
9 characters
method
character
1
0
12 characters
subset
NULL
–
–
empty
rank.by
character
1
0
4 characters
ntree
numeric
1
0
1000
mtry
numeric
1
0
20
The nested tables do not share one set of columns, so there is no single schema to show.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.22 | 2025-10-29 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.21 | 2025-04-15 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.20 | 2024-10-29 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.19 | 2024-04-30 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.18 | 2023-10-24 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.17 | 2023-04-25 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.16 | 2022-11-01 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.15 | 2022-04-26 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.14 | 2021-10-26 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.13 | 2021-05-19 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.12 | 2020-10-27 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.11 | 2020-04-27 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.10 | 2019-10-29 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.9 | 2019-05-02 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.8 | 2019-01-04 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.7 | 2018-04-30 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.6 | 2017-10-30 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.5 | 2017-04-24 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.4 | 2016-12-03 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.3 | 2016-06-22 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.2 | 2015-10-20 | 9 elements | Unchanged | rda · xz version 2 · 525 KB | exact |
| 3.1 | 2015-06-22 | 9 elements | Data changed Distinct 8 → 9 | rda · xz version 2 · 525 KB | exact |
| 3.0 | 2014-10-17 | 8 elements | – | rda · xz version 2 · 515 KB | exact |
Distinct is how many different values were counted in the object.