RNADuplexesRawChimSTAR
Chimeric reads of SPLASH
Bundled with DuplexDiscovereR · exported, loads via data()
Class
tibble
tbl_df/tbl/data.frame
Dimensions
5,000 × 21
Missing
5,000
Format
rda · xz
version 3 · 228 KB
File
data/RNADuplexesSampleData.rda
Fingerprint
12277b31
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
chr_donorA
character
1
0
5 characters
brkpt_donorAnumeric3,178011630254 – 50799091mean 3.54e+7
Min.
11630254
1st Qu.
2.95809e+7
Median
38678219
Mean
3.54046e+7
3rd Qu.
4.03466e+7
Max.
50799091
Std. dev
8.12578e+6
Skewness
-0.7129
Kurtosis
-0.2417
Outliers
99 low · 0 high
strand_donorA
character
2
0
1 characters
chr_acceptorB
character
1
0
5 characters
brkpt_acceptorBnumeric3,206011252077 – 50799091mean 3.549e+7
Min.
11252077
1st Qu.
29769740
Median
3.87159e+7
Mean
3.54917e+7
3rd Qu.
40346646
Max.
50799091
Std. dev
8.07197e+6
Skewness
-0.7103
Kurtosis
-0.248
Outliers
33 low · 0 high
strand_acceptorB
character
2
0
1 characters
junction_typenumeric300 – 2mean 0.2692
Min.
0
1st Qu.
0
Median
0
Mean
0.2692
3rd Qu.
1
Max.
2
Std. dev
0.4463
Skewness
1.081
Kurtosis
-0.7133
Zeros
3,660
repeat_left_lenAnumeric800 – 100mean 0.571
Min.
0
1st Qu.
0
Median
0
Mean
0.571
3rd Qu.
0
Max.
100
Std. dev
3.8334
Skewness
24.45
Kurtosis
630.7
Zeros
3,877
repeat_right_lenBnumeric1700 – 100mean 1.278
Min.
0
1st Qu.
0
Median
1
Mean
1.2782
3rd Qu.
2
Max.
100
Std. dev
3.9821
Skewness
21.62
Kurtosis
527.8
Zeros
1,909
Outliers
890 low · 89 high
read_name
character
4,972
0
16 – 20 characters
start_alnAnumeric3,555011630221 – 50799037mean 3.54e+7
Min.
11630221
1st Qu.
2.95809e+7
Median
3.86782e+7
Mean
3.54045e+7
3rd Qu.
4.03466e+7
Max.
50799037
Std. dev
8.12576e+6
Skewness
-0.7129
Kurtosis
-0.2417
Outliers
99 low · 0 high
cigar_alnA
character
4,093
0
6 – 17 characters
start_alnBnumeric3,646011252037 – 50799092mean 3.549e+7
Min.
11252037
1st Qu.
29769741
Median
3.87159e+7
Mean
3.54916e+7
3rd Qu.
40346647
Max.
50799092
Std. dev
8.072e+6
Skewness
-0.7103
Kurtosis
-0.248
Outliers
33 low · 0 high
cigar_alnB
character
3,643
0
6 – 16 characters
num_chim_alnnumeric501 – 5mean 1.198
Min.
1
1st Qu.
1
Median
1
Mean
1.1982
3rd Qu.
1
Max.
5
Std. dev
0.6237
Skewness
3.789
Kurtosis
14.95
max_poss_aln_scorenumeric75056 – 133mean 94.53
Min.
56
1st Qu.
86
Median
95
Mean
94.525
3rd Qu.
104
Max.
133
Std. dev
12.9143
Skewness
-0.2523
Kurtosis
-0.3814
Outliers
41 low · 3 high
non_chim_aln_scorenumeric80025 – 111mean 60.77
Min.
25
1st Qu.
51
Median
60
Mean
60.766
3rd Qu.
70
Max.
111
Std. dev
13.9505
Skewness
0.2323
Kurtosis
-0.5032
Outliers
80 low · 8 high
this_chim_aln_scorenumeric85035 – 130mean 89.33
Min.
35
1st Qu.
80
Median
90
Mean
89.329
3rd Qu.
99
Max.
130
Std. dev
13.3695
Skewness
-0.2627
Kurtosis
-0.2489
Outliers
2015 low · 5 high
bestall_chim_aln_scorenumeric85035 – 130mean 89.34
Min.
35
1st Qu.
80.75
Median
90
Mean
89.3446
3rd Qu.
99
Max.
130
Std. dev
13.3792
Skewness
-0.2614
Kurtosis
-0.2523
Outliers
2217 low · 5 high
PEmerged_boolnumeric100 – 0mean 0
Min.
0
1st Qu.
0
Median
0
Mean
0
3rd Qu.
0
Max.
0
Std. dev
0
Zeros
5,000
Order
constant
readgrplogical05,0000 true·0 false
Longest missing run
5,000
Leading
5,000
Trailing
5,000
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 5,000 × 21 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.22 | 2025-10-29 | 5,000 × 21 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.21 | 2025-04-15 | 5,000 × 21 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.20 | 2024-10-29 | 5,000 × 21 | – | rda · xz version 3 · 228 KB | exact |