RNADuplexesRawBed
Chimeric reads of SPLASH converted to .bedpe fromat
Bundled with DuplexDiscovereR · exported, loads via data()
Class
spec_tbl_df
spec_tbl_df/tbl_df/tbl/data.frame
Dimensions
2,040 × 10
Missing
0
Format
rda · xz
version 3 · 228 KB
File
data/RNADuplexesSampleData.rda
Fingerprint
df259765
About this object
A tibble. It is a data.frame with different defaults. It never converts strings to factors, never adds row names, and prints a few rows rather than all of them. A column of it can itself hold a list, which is how nested tables are stored. R object catalogue
Declared attributes
Other attributes
Read by name, kind and length, with the value where it is short enough to show. No rule here knows what any of them means.
| Attribute | Holds | Length | |
|---|---|---|---|
| problems | NULL | 0 | |
| spec | col_spec | 3 |
Columns
Column
Type
Distinct
Missing
Summary
chromA
character
1
0
5 characters
startAnumeric1,710011630221 – 50720348mean 3.588e+7
Min.
11630221
1st Qu.
3.05799e+7
Median
3.93133e+7
Mean
3.58779e+7
3rd Qu.
4.03466e+7
Max.
50720348
Std. dev
7.8816e+6
Skewness
-0.7166
Kurtosis
-0.1406
Outliers
33 low · 0 high
endAnumeric1,272011630295 – 50720380mean 3.588e+7
Min.
11630295
1st Qu.
3.058e+7
Median
39313311
Mean
3.5878e+7
3rd Qu.
4.03467e+7
Max.
50720380
Std. dev
7.8816e+6
Skewness
-0.7166
Kurtosis
-0.1406
Outliers
33 low · 0 high
chromB
character
1
0
5 characters
startBnumeric1,269011252037 – 50720392mean 3.595e+7
Min.
11252037
1st Qu.
30586631
Median
3.93136e+7
Mean
3.59508e+7
3rd Qu.
40349832
Max.
50720392
Std. dev
7.81699e+6
Skewness
-0.7087
Kurtosis
-0.1507
Outliers
11 low · 0 high
endBnumeric1,671011252077 – 50720443mean 3.595e+7
Min.
11252077
1st Qu.
3.05867e+7
Median
39313695
Mean
3.59509e+7
3rd Qu.
40349856
Max.
50720443
Std. dev
7.81699e+6
Skewness
-0.7087
Kurtosis
-0.1507
Outliers
11 low · 0 high
readname
character
2,040
0
16 – 20 characters
flagnumeric100 – 0mean 0
Min.
0
1st Qu.
0
Median
0
Mean
0
3rd Qu.
0
Max.
0
Std. dev
0
Zeros
2,040
Order
constant
strandA
character
2
0
1 characters
strandB
character
2
0
1 characters
Version history
| Version | Released | Rows × Cols | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 2,040 × 10 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.22 | 2025-10-29 | 2,040 × 10 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.21 | 2025-04-15 | 2,040 × 10 | Unchanged | rda · xz version 3 · 228 KB | exact |
| 3.20 | 2024-10-29 | 2,040 × 10 | – | rda · xz version 3 · 228 KB | exact |