cytobands
Cytoband location information
Bundled with ChromHeatMap · exported, loads via data()
Class
list
Elements
3
Missing
0
Format
rda · gzip
version 2 · 9.2 KB
File
data/cytobands.rda
Fingerprint
a10f0d5b
Format documented
Yes
Source
The UCSC genome annotation database: http://hgdownload.cse.ucsc.edu/downloads.html
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
3
Nesting depth
2
Element length
6 – 6
Total length
18
Nested rows
1,513
Nested columns
6
Elements
Element
Type
Distinct
Missing
Summary
Homo sapienslist60nested·862 rows nested
Element length
862 – 862
Total length
5,172
Nested rows
862
What is inside it
Element
Type
Distinct
Missing
Summary
chrfactor240chr163chr262chr362chr648chr447chr545+18 more
chr163chr262chr362chr648chr447chr545+18 more
Levels
24
Used
24
Rows per level
chr163chr262chr362chr648chr447chr545chr744chr943chr1042chr1241chr840chrX40chr1136chr1336chr1432chr1532chr1625chr1724chr1820chr2020chr1919chr2216chr2114chrY11
startinteger66700 – 241700000mean 7.263e+7
Min.
0
1st Qu.
28575000
Median
61650000
Mean
7.26266e+7
3rd Qu.
107200000
Max.
241700000
Std. dev
5.35522e+7
Skewness
0.7574
Kurtosis
-0.0019
Zeros
24
Outliers
80 low · 8 high
endinteger69001700000 – 247249719mean 7.62e+7
Min.
1700000
1st Qu.
31950000
Median
65150000
Mean
7.62001e+7
3rd Qu.
111325000
Max.
247249719
Std. dev
5.37093e+7
Skewness
0.7615
Kurtosis
0.0116
Outliers
80 low · 8 high
band
character
185
0
2 – 6 characters
stainfactor80gneg414gpos50121gpos7589gpos2587gpos10081acen48+2 more
gneg414gpos50121gpos7589gpos2587gpos10081acen48+2 more
Levels
8
Used
8
Rows per level
gneg414gpos50121gpos7589gpos2587gpos10081acen48gvar17stalk5
arm
factor
2
0
q570p292
Mus musculuslist60nested·403 rows nested
Element length
403 – 403
Total length
2,418
Nested rows
403
What is inside it
Element
Type
Distinct
Missing
Summary
chrfactor210chr133chrX26chr225chr625chr523chr823+15 more
chr133chrX26chr225chr625chr523chr823+15 more
Levels
21
Used
21
Rows per level
chr133chrX26chr225chr625chr523chr823chr422chr321chr720chr920chr1118chr1017chr1217chr1317chr1417chr1517chr1717chr1616chr1813chr198chrY8
startinteger38300 – 189763443mean 6.937e+7
Min.
0
1st Qu.
3.31928e+7
Median
66950659
Mean
6.9366e+7
3rd Qu.
1.00969e+8
Max.
189763443
Std. dev
4.3743e+7
Skewness
0.3669
Kurtosis
-0.6442
Zeros
21
endinteger40303578074 – 197195432mean 7.595e+7
Min.
3578074
1st Qu.
41307381
Median
71608950
Mean
7.59538e+7
3rd Qu.
1.06763e+8
Max.
197195432
Std. dev
4.32716e+7
Skewness
0.3988
Kurtosis
-0.6613
band
character
97
0
1 – 4 characters
stain
factor
5
0
gneg190gpos3385gpos10083gpos6644gpos751
arm
factor
1
0
q403
Rattus norvegicuslist60nested·248 rows nested
Element length
248 – 248
Total length
1,488
Nested rows
248
What is inside it
Element
Type
Distinct
Missing
Summary
chrfactor220chr122chr221chr318chr415chr1313chr1513+16 more
chr122chr221chr318chr415chr1313chr1513+16 more
Levels
22
Used
22
Rows per level
chr122chr221chr318chr415chr1313chr1513chr513chr613chr913chrX13chr1012chr1612chr711chr89chr128chr178chr188chr117chr146chr196chr205chrY2
startinteger22700 – 253666368mean 6.906e+7
Min.
0
1st Qu.
2.48507e+7
Median
54338640
Mean
6.90616e+7
3rd Qu.
9.94299e+7
Max.
253666368
Std. dev
5.8444e+7
Skewness
1.096
Kurtosis
0.8065
Zeros
22
Outliers
90 low · 9 high
endinteger24803920547 – 267910886mean 8.031e+7
Min.
3920547
1st Qu.
3.47584e+7
Median
6.94132e+7
Mean
8.03121e+7
3rd Qu.
108174987
Max.
267910886
Std. dev
5.87725e+7
Skewness
1.055
Kurtosis
0.6848
Outliers
110 low · 11 high
band
character
39
0
2 – 4 characters
stain
factor
3
0
gneg125gpos110gvar13
arm
factor
2
0
q207p41
Every nested table has these 6 columns
- chr
- start
- end
- band
- stain
- arm
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.22 | 2025-10-29 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.21 | 2025-04-15 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.20 | 2024-10-29 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.19 | 2024-04-30 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.18 | 2023-10-24 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.17 | 2023-04-25 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.16 | 2022-11-01 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.15 | 2022-04-26 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.14 | 2021-10-26 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.13 | 2021-05-19 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.12 | 2020-10-27 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.11 | 2020-04-27 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.10 | 2019-10-29 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.9 | 2019-05-02 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.8 | 2018-10-30 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.7 | 2018-04-30 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.6 | 2017-10-30 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.5 | 2017-04-24 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.4 | 2016-10-17 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.3 | 2016-05-03 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.2 | 2015-10-13 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.1 | 2015-04-16 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 3.0 | 2014-10-13 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.14 | 2014-04-11 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.13 | 2013-10-14 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.12 | 2013-04-03 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.11 | 2012-10-01 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.10 | 2012-03-30 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.9 | 2011-10-31 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.8 | 2011-04-14 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.7 | 2010-10-18 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.6 | 2010-04-22 | 3 elements | Unchanged | rda · gzip version 2 · 9.2 KB | exact |
| 2.5 | 2009-10-27 | 3 elements | – | rda · gzip version 2 · 9.2 KB | exact |