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alns

Bundled with CRISPRseek · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
2 × 21
Missing
0
Format
rds · gzip
version 3 · 585 B
File
inst/extdata/alns.RDS
Fingerprint
cf5ed927
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Columns
Column
Type
Distinct
Missing
Summary
offTarget
character
2
0
47 – 49 characters
peak_score
integer
2
0
81 – 1064655mean 532368
Min.
81
1st Qu.
266224
Median
532368
Mean
532368
3rd Qu.
798512
Max.
1064655
Std. dev
752767
Order
ascending
gRNA.name
character
1
0
8 characters
gRNAPlusPAM
character
1
0
23 characters
offTarget_sequence
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
24 characters
[[2]]
character
1
0
23 characters
guideAlignment2OffTarget
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
21 characters
[[2]]
character
1
0
20 characters
offTargetStrand
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
1 characters
[[2]]
character
1
0
1 characters
mismatch.distance2PAM
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
7 characters
[[2]]
character
1
0
0 characters·1 blank
n.PAM.mismatch
list
1
0
integer
Element class
integer
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
0
[[2]]
integer
1
0
0
n.mismatch
list
2
0
integer
Element class
integer
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
3
[[2]]
integer
1
0
0
PAM.sequence
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
3 characters
[[2]]
character
1
0
3 characters
offTarget_Start
numeric
2
0
60498367 – 63727706mean 6.211e+7
Min.
60498367
1st Qu.
6.13057e+7
Median
6.2113e+7
Mean
6.2113e+7
3rd Qu.
6.29204e+7
Max.
63727706
Std. dev
2.28349e+6
Order
descending
offTarget_End
numeric
2
0
60498389 – 63727729mean 62113059
Min.
60498389
1st Qu.
61305724
Median
62113059
Mean
62113059
3rd Qu.
62920394
Max.
63727729
Std. dev
2.28349e+6
Order
descending
chromosome
character
2
0
4 – 5 characters
pos.mismatch
list
2
0
nested
Element length
0 – 3
Total length
3
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
numeric
3
0
1 – 19mean 9.333
Min.
1
1st Qu.
4.5
Median
8
Mean
9.3333
3rd Qu.
13.5
Max.
19
Std. dev
9.0738
Skewness
0.1438
Kurtosis
-2.333
Order
ascending
[[2]]
integer
0
0
0 values
pos.indel
list
2
0
character
Element class
character
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
character
1
0
2 characters
[[2]]
character
1
0
0 characters·1 blank
pos.insertion
list
1
0
integer
Element class
integer
Element length
0 – 0
Total length
0
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
0
0
0 values
[[2]]
integer
0
0
0 values
pos.deletion
list
2
0
integer
Element class
integer
Element length
0 – 1
Total length
1
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
12
[[2]]
integer
0
0
0 values
n.indels
list
2
0
integer
Element class
integer
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
1
[[2]]
integer
1
0
0
n.insertion
list
1
0
integer
Element class
integer
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
0
[[2]]
integer
1
0
0
n.deletion
list
2
0
integer
Element class
integer
Element length
1 – 1
Total length
2
What is inside it
Element
Type
Distinct
Missing
Summary
[[1]]
integer
1
0
1
[[2]]
integer
1
0
0
The same data in 1 other package

This data is identical to the data these packages carry, down to the byte.

GUIDEseq

The structure fingerprint found nothing beyond this list.

Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-282 × 21Unchangedrds · gzip
version 3 · 585 B
exact
3.222025-10-292 × 21Unchangedrds · gzip
version 3 · 585 B
exact
3.212025-04-152 × 21–rds · gzip
version 3 · 585 B
exact

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