COHCAP.450k.UCSC
Annotation for UCSC CpG Islands for 450k Illumina Human Methylation Array
Bundled with COHCAPanno · exported, loads via data()
Class
data.frame
Dimensions
485,512 × 5
Missing
295,699
Format
rda · xz
version 2 · 4.4 MB
File
data/COHCAP.450k.UCSC.rda
Fingerprint
9addb732
Source
450k Array: http://www.illumina.com/products/methylation_450_beadchip_kits.ilmn Annotation File: http://support.illumina.com/downloads/humanmethylation450_15017482_v12.ilmn
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
factor485,5120cg000000291cg000001081cg000001091cg000001651cg000002361cg000002891+485,506 more
cg000000291cg000001081cg000001091cg000001651cg000002361cg000002891+485,506 more
Levels
485,512
Used
485,512
Rows per level, the 50 commonest of 485,512
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
factor240146,857636,611234,810730,0171128,7941727,879+18 more
146,857636,611234,810730,0171128,7941727,879+18 more
Levels
24
Used
24
Rows per level
146,857636,611234,810730,0171128,7941727,8791925,521325,1591224,5391024,388524,3271621,969820,950420,4641515,2591415,0781312,285X11,2322010,37999,861228,552185,922214,243Y416
integer484,77505999 – 249212500mean 7.446e+7
Min.
5999
1st Qu.
28927501
Median
60674148
Mean
7.44578e+7
3rd Qu.
1.13842e+8
Max.
249212500
Std. dev
5.8297e+7
Skewness
0.7922
Kurtosis
-0.0569
Outliers
2,8300 low · 2830 high
factor23,271119,652PTPRN21,288MAD1L1733PRDM16623TNXB563DIP2C482RPTOR444+23,265 more
PTPRN21,288MAD1L1733PRDM16623TNXB563DIP2C482RPTOR444+23,265 more
Levels
23,271
Used
23,271
Rows per level, the 50 commonest of 23,271
PTPRN21,288MAD1L1733PRDM16623TNXB563DIP2C482RPTOR444HDAC4419INPP5A395ADARB2369RASA3355ATP11A351TBCD326AGAP1306SDK1305MCF2L304C7orf50270SHANK2266PRKCZ263CAMTA1251KCNQ1249ANKRD11244RPS6KA2244GALNT9243COL11A2237NCOR2226ARHGEF10225LMF1223CUX1222TRAPPC9220CBFA2T3218TRIM26215PRKAR1B214SORCS2205DLGAP2197HRNBP3196NXN196ABR194GABBR1185BANP182NTM181BRD2178CASZ1176MGMT176FOXK1175SLC12A7175EHMT2172GPR133172TSNARE1172MYT1L171FBRSL1169
factor27,176176,047chr6:31830299-31830948117chr6:31939730-31940559117chr6:33266302-33267582115chr6:32939275-32940954112chr6:30710307-30712440110chr6:32820849-32822370107+27,170 more
chr6:31830299-31830948117chr6:31939730-31940559117chr6:33266302-33267582115chr6:32939275-32940954112chr6:30710307-30712440110chr6:32820849-32822370107+27,170 more
Levels
27,176
Used
27,176
Rows per level, the 50 commonest of 27,176
chr6:31830299-31830948117chr6:31939730-31940559117chr6:33266302-33267582115chr6:32939275-32940954112chr6:30710307-30712440110chr6:32820849-32822370107chr6:28831682-28832134100chr6:30881533-3088229698chr6:32163292-3216438398chr6:33256539-3325697398chr6:32811494-3281183995chr6:31632815-3163409394chr6:31125894-3112656193chr6:32134460-3213519692chr7:94284858-9428652792chr6:31856896-3185710491chr6:31695894-3169824590chr6:28890951-2889201389chr6:32121829-3212252989chr6:32063533-3206504488chr6:31599519-3159976187chr6:32097820-3209808687chr6:33385678-3338626286chr6:33422046-3342253086chr6:33244677-3324555484chr6:30654392-3065493483chr17:1952919-196232882chr6:30294169-3029507181chr6:31587779-3158902481chr6:33239326-3324009981chr6:32055067-3205560179chr6:31509668-3150989678chr10:8091374-809832977chr20:57463652-5746773977chr6:30614721-3061564377chr6:30312837-3031341975chr6:31763240-3176390574chr6:28554863-2855512472chr6:33129291-3312971872chr1:92945907-9295260971chr6:29974220-2997536971chr6:32975684-3297592671chr6:30457369-3045817570chr6:31619856-3162052570chr6:30180933-3018218769chr6:32806284-3280666969chr6:33167885-3316871569chr6:33216103-3321746369chr11:2158951-216248468chr6:31707489-3170833668
Same structure in 2 other datasets
These datasets share the same columns and types but hold different data.
Version history
| Version | Released | Size | Change | Stored as | Confidence |
|---|---|---|---|---|---|
| 3.23 | 2026-04-28 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.22 | 2025-10-29 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.21 | 2025-04-15 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.20 | 2024-10-29 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.19 | 2024-04-30 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.18 | 2023-10-24 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.17 | 2023-04-25 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.16 | 2022-11-01 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.15 | 2022-04-26 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.14 | 2021-10-26 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.13 | 2021-05-19 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.12 | 2020-10-27 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.11 | 2020-04-27 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.10 | 2019-10-29 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.9 | 2019-05-02 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.8 | 2018-10-30 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.7 | 2018-04-30 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.6 | 2017-10-30 | 485,512 × 5 | Unchanged | rda · xz version 2 · 4.4 MB | exact |
| 3.5 | 2017-08-16 | 485,512 × 5 | – | rda · xz version 2 · 4.4 MB | exact |