NeveData
Breast Cancer aCGH data
Bundled with CNVassocData · exported, loads via data()
Class
list
Elements
2
Missing
0
Format
rda · xz
version 2 · 472 KB
File
data/NeveData.rda
Fingerprint
138bc0b7
Format documented
Yes
Source
Data are freely available from the bioconductor website (http://www.bioconductor.org/) through the package Neve2006
About this object
R's general-purpose container. Elements can be any type and any size. R object catalogue
Structure
Distinct
2
Nesting depth
2
Element length
50 – 54
Total length
104
Nested rows
2,621
Nested columns
54
Elements
Element
Type
Distinct
Missing
Summary
datalist530nested·2,621 rows nested
Element length
2,621 – 2,621
Total length
141,534
Nested rows
2,621
What is inside it
Element
Type
Distinct
Missing
Summary
Clonefactor2,6210341H15196J141BAC-117A21BAC-121O11BAC-131B91BAC-139K181+2,690 more
341H15196J141BAC-117A21BAC-121O11BAC-131B91BAC-139K181+2,690 more
Levels
2,696
Used
2,621
Unused
75
Rows per level, the 50 commonest of 2,696
341H15196J141BAC-117A21BAC-121O11BAC-131B91BAC-139K181BAC-191E51BAC-35M171BAC-383G211BAC-3B231BAC-403B211BAC-51J51BAC-80J11BAC-91N101BAL01B25791BAL01B25841BAL01B25851BAL01B25921BAL01B25981BAL02B25991BAL02B26011BAL02B26031BAL04B26081BAL08B26111BAL10B26181BAL10B26201BAL11B26211BAL12B26231BAL12B26241BAL13B26251BAL13B26271BAL13B26361BAL13B26451BAL15B26391BAL17B26431BAL17B26521BAL19B26501CTA-799F101CTB-102E191CTB-110J241CTB-111H211CTB-112F71CTB-11K11CTB-11K141CTB-11O231CTB-120N121CTB-12F41CTB-134C71CTB-134O191CTB-136O141
Chrominteger2201 – 22mean 9.456
Min.
1
1st Qu.
4
Median
9
Mean
9.4556
3rd Qu.
14
Max.
22
Std. dev
6.0237
Skewness
0.3623
Kurtosis
-1.034
Order
ascending
kbnumeric2,53701 – 243615958mean 7.446e+7
Min.
1
1st Qu.
29867224
Median
64091064
Mean
7.44612e+7
3rd Qu.
114185994
Max.
243615958
Std. dev
5.47616e+7
Skewness
0.6791
Kurtosis
-0.2681
Outliers
20 low · 2 high
kb.1numeric2,53701 – 243615958mean 7.446e+7
Min.
1
1st Qu.
29867224
Median
64091064
Mean
7.44612e+7
3rd Qu.
114185994
Max.
243615958
Std. dev
5.47616e+7
Skewness
0.6791
Kurtosis
-0.2681
Outliers
20 low · 2 high
X600MPEnumeric2,55854-1.1229 – 1.7134mean 0.005
Min.
-1.1229
1st Qu.
-0.1209
Median
-0.004
Mean
0.005
3rd Qu.
0.1169
Max.
1.7134
Std. dev
0.3221
Skewness
0.391
Kurtosis
3.79
Zeros
1
Outliers
340167 low · 173 high
Longest gap
2
AU565numeric2,483127-1.4301 – 2.9623mean 0.046
Min.
-1.4301
1st Qu.
-0.1969
Median
-0.0217
Mean
0.046
3rd Qu.
0.2048
Max.
2.9623
Std. dev
0.4367
Skewness
1.633
Kurtosis
6.85
Zeros
1
Outliers
12615 low · 111 high
Longest gap
3
BT20numeric2,470137-1.2593 – 2.3079mean 0.045
Min.
-1.2593
1st Qu.
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Median
0.0366
Mean
0.045
3rd Qu.
0.2749
Max.
2.3079
Std. dev
0.4228
Skewness
0.2245
Kurtosis
1.211
Outliers
8942 low · 47 high
Longest gap
3
BT474numeric2,465150-1.5836 – 3.717mean 0.0848
Min.
-1.5836
1st Qu.
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Median
0.0107
Mean
0.0848
3rd Qu.
0.2011
Max.
3.717
Std. dev
0.3677
Skewness
3.023
Kurtosis
19.85
Zeros
1
Outliers
14529 low · 116 high
Longest gap
3
BT483numeric2,55159-1.0349 – 1.5256mean 0.0224
Min.
-1.0349
1st Qu.
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Median
0.0106
Mean
0.0224
3rd Qu.
0.2266
Max.
1.5256
Std. dev
0.3781
Skewness
0.4505
Kurtosis
0.2929
Zeros
1
Outliers
533 low · 50 high
Longest gap
2
BT549numeric2,56552-1.4545 – 0.9147mean -0.0025
Min.
-1.4545
1st Qu.
-0.2499
Median
0.0112
Mean
-0.0025
3rd Qu.
0.1662
Max.
0.9147
Std. dev
0.3161
Skewness
0.3182
Kurtosis
0.3816
Zeros
1
Outliers
396 low · 33 high
Longest gap
3
CAMA1numeric2,509105-2.033 – 1.7944mean -0.0156
Min.
-2.033
1st Qu.
-0.2087
Median
0.0316
Mean
-0.0156
3rd Qu.
0.1567
Max.
1.7944
Std. dev
0.3617
Skewness
0.169
Kurtosis
2.449
Zeros
1
Outliers
12873 low · 55 high
Longest gap
2
HBL100numeric2,54177-1.4572 – 1.4917mean 0.0132
Min.
-1.4572
1st Qu.
-0.213
Median
0.0436
Mean
0.0132
3rd Qu.
0.2348
Max.
1.4917
Std. dev
0.3538
Skewness
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Kurtosis
0.5034
Zeros
1
Outliers
3310 low · 23 high
Longest gap
2
HCC1007numeric2,52792-1.3765 – 1.9598mean 0.0414
Min.
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1st Qu.
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Median
0.0061
Mean
0.0414
3rd Qu.
0.3407
Max.
1.9598
Std. dev
0.4586
Skewness
0.3008
Kurtosis
0.2177
Zeros
1
Outliers
288 low · 20 high
Longest gap
2
Leading
1
Trailing
1
HCC1143numeric2,57539-0.8899 – 2.4628mean 0.1017
Min.
-0.8899
1st Qu.
-0.1443
Median
0.0204
Mean
0.1017
3rd Qu.
0.3597
Max.
2.4628
Std. dev
0.3711
Skewness
0.9035
Kurtosis
2.819
Zeros
1
Outliers
210 low · 21 high
Longest gap
2
HCC1187numeric2,497120-1.7258 – 1.4695mean 0.0504
Min.
-1.7258
1st Qu.
-0.2621
Median
-0.092
Mean
0.0504
3rd Qu.
0.4242
Max.
1.4695
Std. dev
0.3872
Skewness
0.2305
Kurtosis
-0.4388
Zeros
1
Outliers
31 low · 2 high
Longest gap
3
HCC1428numeric2,59421-1.4288 – 1.7242mean -0.0102
Min.
-1.4288
1st Qu.
-0.257
Median
-0.0099
Mean
-0.0102
3rd Qu.
0.1998
Max.
1.7242
Std. dev
0.4251
Skewness
0.4058
Kurtosis
1.361
Zeros
1
Outliers
13040 low · 90 high
HCC1500numeric2,491121-2.3419 – 2.6104mean 0.1098
Min.
-2.3419
1st Qu.
-0.0928
Median
0.0147
Mean
0.1098
3rd Qu.
0.4203
Max.
2.6104
Std. dev
0.4569
Skewness
0.1253
Kurtosis
1.953
Zeros
1
Outliers
10773 low · 34 high
Longest gap
3
HCC1569numeric2,55363-0.9551 – 3.6387mean 0.063
Min.
-0.9551
1st Qu.
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Median
0.0342
Mean
0.063
3rd Qu.
0.2692
Max.
3.6387
Std. dev
0.403
Skewness
1.583
Kurtosis
9.198
Zeros
1
Outliers
473 low · 44 high
Longest gap
2
HCC1937numeric2,56653-1.6069 – 1.5967mean 0.0425
Min.
-1.6069
1st Qu.
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Median
0.0383
Mean
0.0425
3rd Qu.
0.2864
Max.
1.5967
Std. dev
0.4118
Skewness
-0.2053
Kurtosis
1.018
Outliers
6541 low · 24 high
Longest gap
3
HCC1954numeric2,57641-1.0754 – 4.7375mean 0.0519
Min.
-1.0754
1st Qu.
-0.1833
Median
-0.0114
Mean
0.0519
3rd Qu.
0.1911
Max.
4.7375
Std. dev
0.4222
Skewness
2.905
Kurtosis
18.64
Zeros
1
Outliers
17017 low · 153 high
HCC202numeric2,58827-1.3649 – 2.7326mean -0.0369
Min.
-1.3649
1st Qu.
-0.3455
Median
-0.0071
Mean
-0.0369
3rd Qu.
0.2316
Max.
2.7326
Std. dev
0.3955
Skewness
0.3128
Kurtosis
3.002
Zeros
1
Outliers
199 low · 10 high
HCC2157numeric2,56456-1.1715 – 2.265mean 0.129
Min.
-1.1715
1st Qu.
-0.2035
Median
0.1006
Mean
0.129
3rd Qu.
0.3475
Max.
2.265
Std. dev
0.4372
Skewness
0.8414
Kurtosis
1.378
Outliers
805 low · 75 high
Longest gap
2
HCC2185numeric2,441177-1.5083 – 3.1003mean 0.0918
Min.
-1.5083
1st Qu.
-0.1305
Median
0.0303
Mean
0.0918
3rd Qu.
0.2758
Max.
3.1003
Std. dev
0.4594
Skewness
1.677
Kurtosis
7.807
Zeros
1
Outliers
15450 low · 104 high
Longest gap
3
HCC3153numeric2,59324-3.1302 – 1.4037mean -0.0069
Min.
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1st Qu.
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Median
0.0456
Mean
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3rd Qu.
0.261
Max.
1.4037
Std. dev
0.4142
Skewness
-0.7742
Kurtosis
3.435
Zeros
1
Outliers
5538 low · 17 high
HCC38numeric2,57640-3.3846 – 1.5132mean 0.0401
Min.
-3.3846
1st Qu.
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Median
0.0355
Mean
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3rd Qu.
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Max.
1.5132
Std. dev
0.433
Skewness
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Kurtosis
2.53
Zeros
1
Outliers
6246 low · 16 high
Longest gap
2
HCC70numeric2,491122-2.1351 – 1.7061mean 0.0559
Min.
-2.1351
1st Qu.
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Median
0.0252
Mean
0.0559
3rd Qu.
0.3371
Max.
1.7061
Std. dev
0.4563
Skewness
-0.0974
Kurtosis
1.542
Zeros
1
Outliers
8957 low · 32 high
Longest gap
2
HS578Tnumeric2,54278-1.0107 – 1.129mean 0.037
Min.
-1.0107
1st Qu.
-0.1518
Median
0.0284
Mean
0.037
3rd Qu.
0.2277
Max.
1.129
Std. dev
0.2865
Skewness
0.0732
Kurtosis
0.6486
Outliers
5520 low · 35 high
Longest gap
2
LY2numeric2,56351-1.2906 – 3.7408mean 0.0727
Min.
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1st Qu.
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Median
0.0175
Mean
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3rd Qu.
0.2652
Max.
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Std. dev
0.4619
Skewness
2.416
Kurtosis
12.37
Outliers
672 low · 65 high
MCF10Anumeric2,56742-1.9581 – 0.9799mean 0.0229
Min.
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1st Qu.
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Median
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Mean
0.0229
3rd Qu.
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Max.
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Std. dev
0.1882
Skewness
0.7299
Kurtosis
10.8
Outliers
27840 low · 238 high
Longest gap
2
MCF12Anumeric2,51898-0.7587 – 0.9958mean 0.0074
Min.
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1st Qu.
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Median
0.0378
Mean
0.0074
3rd Qu.
0.206
Max.
0.9958
Std. dev
0.317
Skewness
0.0372
Kurtosis
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Zeros
1
Outliers
150 low · 15 high
Longest gap
3
MCF7numeric2,440178-1.7623 – 4.1364mean 0.0401
Min.
-1.7623
1st Qu.
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Median
0.0161
Mean
0.0401
3rd Qu.
0.1938
Max.
4.1364
Std. dev
0.4754
Skewness
3.15
Kurtosis
19.01
Zeros
1
Outliers
10527 low · 78 high
Longest gap
2
MDAMB134VInumeric2,53970-1.1698 – 3.4008mean -0.0364
Min.
-1.1698
1st Qu.
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Median
0.0012
Mean
-0.0364
3rd Qu.
0.0933
Max.
3.4008
Std. dev
0.381
Skewness
2.258
Kurtosis
20.28
Zeros
1
Outliers
442322 low · 120 high
Longest gap
2
MDAMB157numeric2,52381-1.6509 – 1.3962mean 0.0283
Min.
-1.6509
1st Qu.
-0.2255
Median
0.0045
Mean
0.0283
3rd Qu.
0.2856
Max.
1.3962
Std. dev
0.3913
Skewness
0.0518
Kurtosis
0.4384
Zeros
1
Outliers
3919 low · 20 high
Longest gap
2
MDAMB175VIInumeric2,52890-0.8182 – 1.763mean 0.0284
Min.
-0.8182
1st Qu.
-0.1408
Median
0.0311
Mean
0.0284
3rd Qu.
0.1871
Max.
1.763
Std. dev
0.3228
Skewness
0.3158
Kurtosis
2.006
Outliers
14284 low · 58 high
Longest gap
2
MDAMB231numeric2,56156-2.1006 – 1.1703mean 0.0079
Min.
-2.1006
1st Qu.
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Median
0.0212
Mean
0.0079
3rd Qu.
0.1867
Max.
1.1703
Std. dev
0.284
Skewness
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Kurtosis
5.197
Zeros
1
Outliers
5426 low · 28 high
Longest gap
2
MDAMB361numeric2,452167-1.3343 – 2.3132mean -0.0204
Min.
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1st Qu.
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Median
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Mean
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3rd Qu.
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Max.
2.3132
Std. dev
0.3847
Skewness
0.4911
Kurtosis
2.523
Outliers
8228 low · 54 high
Longest gap
2
MDAMB415numeric2,55162-1.0164 – 2.3109mean -0.0083
Min.
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1st Qu.
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Median
0.0001
Mean
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3rd Qu.
0.117
Max.
2.3109
Std. dev
0.2324
Skewness
2.032
Kurtosis
18.94
Zeros
1
Outliers
6429 low · 35 high
Longest gap
2
MDAMB435numeric2,399218-0.9079 – 1.4689mean 0.1363
Min.
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1st Qu.
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Median
0.0286
Mean
0.1363
3rd Qu.
0.3435
Max.
1.4689
Std. dev
0.3179
Skewness
0.7083
Kurtosis
0.2356
Zeros
1
Outliers
2114 low · 7 high
Longest gap
3
MDAMB436numeric2,350262-1.2491 – 1.1387mean -0.0409
Min.
-1.2491
1st Qu.
-0.344
Median
-0.0057
Mean
-0.0409
3rd Qu.
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Max.
1.1387
Std. dev
0.3543
Skewness
0.1615
Kurtosis
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Zeros
1
Outliers
61 low · 5 high
Longest gap
4
Trailing
1
MDAMB468numeric2,496120-1.3253 – 4.4mean 0.0999
Min.
-1.3253
1st Qu.
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Median
0.0684
Mean
0.0999
3rd Qu.
0.3851
Max.
4.4
Std. dev
0.4276
Skewness
1.911
Kurtosis
14.47
Zeros
1
Outliers
162 low · 14 high
Longest gap
3
Trailing
1
SKBR3numeric2,440180-1.6007 – 3.0919mean 0.0589
Min.
-1.6007
1st Qu.
-0.2449
Median
-0.0071
Mean
0.0589
3rd Qu.
0.2187
Max.
3.0919
Std. dev
0.5083
Skewness
1.561
Kurtosis
5.382
Zeros
1
Outliers
13311 low · 122 high
Longest gap
3
Leading
1
SUM1315MO2numeric2,494117-2.1959 – 1.4153mean 0.0553
Min.
-2.1959
1st Qu.
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Median
0.0372
Mean
0.0553
3rd Qu.
0.3159
Max.
1.4153
Std. dev
0.3661
Skewness
-0.221
Kurtosis
0.9879
Zeros
1
Outliers
3329 low · 4 high
Longest gap
2
SUM149PTnumeric2,54969-2.5022 – 1.4252mean 0.0864
Min.
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1st Qu.
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Median
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Mean
0.0864
3rd Qu.
0.3638
Max.
1.4252
Std. dev
0.4256
Skewness
-0.2134
Kurtosis
1.726
Zeros
1
Outliers
3924 low · 15 high
Longest gap
2
SUM159PTnumeric2,58823-1.0575 – 3.5109mean 0.0205
Min.
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1st Qu.
-0.0719
Median
0.008
Mean
0.0205
3rd Qu.
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Max.
3.5109
Std. dev
0.2166
Skewness
6.467
Kurtosis
96.38
Zeros
1
Outliers
11854 low · 64 high
SUM185PEnumeric2,54574-1.7271 – 1.6558mean 0.039
Min.
-1.7271
1st Qu.
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Median
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Mean
0.039
3rd Qu.
0.2305
Max.
1.6558
Std. dev
0.2984
Skewness
0.291
Kurtosis
1.088
Zeros
1
Outliers
3716 low · 21 high
Longest gap
2
SUM190PTnumeric2,55857-1.3904 – 4.2557mean 0.0255
Min.
-1.3904
1st Qu.
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Median
0.0189
Mean
0.0255
3rd Qu.
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Max.
4.2557
Std. dev
0.3991
Skewness
1.134
Kurtosis
9.612
Zeros
1
Outliers
328 low · 24 high
SUM225CWNnumeric2,424192-1.5354 – 5.0555mean 0.0243
Min.
-1.5354
1st Qu.
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Median
0.0178
Mean
0.0243
3rd Qu.
0.2869
Max.
5.0555
Std. dev
0.449
Skewness
1.332
Kurtosis
12.91
Zeros
1
Outliers
8239 low · 43 high
Longest gap
2
SUM44PEnumeric2,477141-1.87 – 2.8407mean -0.2036
Min.
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1st Qu.
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Median
-0.0398
Mean
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3rd Qu.
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Max.
2.8407
Std. dev
0.488
Skewness
0.9517
Kurtosis
3.324
Zeros
3
Outliers
401 low · 39 high
Longest gap
2
SUM52PEnumeric2,56849-1.2578 – 4.3015mean 0.0466
Min.
-1.2578
1st Qu.
-0.2384
Median
-0.0002
Mean
0.0466
3rd Qu.
0.3178
Max.
4.3015
Std. dev
0.4809
Skewness
1.378
Kurtosis
7.998
Zeros
1
Outliers
6513 low · 52 high
Longest gap
2
T47Dnumeric2,490126-1.3956 – 1.4237mean 0.0277
Min.
-1.3956
1st Qu.
-0.3302
Median
0.0588
Mean
0.0277
3rd Qu.
0.3761
Max.
1.4237
Std. dev
0.4036
Skewness
0.0937
Kurtosis
-0.574
Zeros
1
Outliers
11 low · 0 high
Longest gap
2
Trailing
1
phenonumeric200 – 1mean 0.38
Min.
0
1st Qu.
0
Median
0
Mean
0.38
3rd Qu.
1
Max.
1
Std. dev
0.4903
Skewness
0.4797
Kurtosis
-1.805
Zeros
31
Every nested table has these 50 columns
- Clone
- Chrom
- kb
- kb.1
- X600MPE
- AU565
- BT20
- BT474
- BT483
- BT549
- CAMA1
- HBL100
- HCC1007
- HCC1143
- HCC1187
- HCC1428
- HCC1500
- HCC1569
- HCC1937
- HCC1954
- HCC202
- HCC2157
- HCC2185
- HCC3153
- HCC38
- HCC70
- HS578T
- LY2
- MCF10A
- MCF12A
- MCF7
- MDAMB134VI
- MDAMB157
- MDAMB175VII
- MDAMB231
- MDAMB361
- MDAMB415
- MDAMB435
- MDAMB436
- MDAMB468
- SKBR3
- SUM1315MO2
- SUM149PT
- SUM159PT
- SUM185PE
- SUM190PT
- SUM225CWN
- SUM44PE
- SUM52PE
- T47D