A112
Copy Number Variant intensity data (from CNVtools)
Bundled with CNVassocData · exported, loads via data()
Class
data.frame
Dimensions
2,593 × 35
Missing
0
Format
rda · xz
version 2 · 423 KB
File
data/A112.rda
Fingerprint
8731d2bb
Source
Obtained from CNVtools package (Wellcome Trust Case Control Consortium)
About this object
Equal-length columns presented as a table, R's standard rectangular format. R object catalogue
Columns
Column
Type
Distinct
Missing
Summary
factor2,5930WTCCC01-11474A11WTCCC01-11474A21WTCCC01-11474A31WTCCC01-11474A41WTCCC01-11474A51WTCCC01-11474A61+2,587 more
WTCCC01-11474A11WTCCC01-11474A21WTCCC01-11474A31WTCCC01-11474A41WTCCC01-11474A51WTCCC01-11474A61+2,587 more
Levels
2,593
Used
2,593
Rows per level, the 50 commonest of 2,593
WTCCC01-11474A11WTCCC01-11474A21WTCCC01-11474A31WTCCC01-11474A41WTCCC01-11474A51WTCCC01-11474A61WTCCC01-11474B11WTCCC01-11474B21WTCCC01-11474B31WTCCC01-11474B41WTCCC01-11474B51WTCCC01-11474B61WTCCC01-11474C11WTCCC01-11474C21WTCCC01-11474C31WTCCC01-11474C41WTCCC01-11474C51WTCCC01-11474C61WTCCC01-11474D11WTCCC01-11474D21WTCCC01-11474D31WTCCC01-11474D41WTCCC01-11474D51WTCCC01-11474D61WTCCC01-11474E11WTCCC01-11474E21WTCCC01-11474E31WTCCC01-11474E41WTCCC01-11474E51WTCCC01-11474E61WTCCC01-11474F21WTCCC01-11474F31WTCCC01-11474F41WTCCC01-11474F51WTCCC01-11474F61WTCCC01-11474G11WTCCC01-11474G21WTCCC01-11474G31WTCCC01-11474G41WTCCC01-11474G51WTCCC01-11474G61WTCCC01-11474H11WTCCC01-11474H21WTCCC01-11474H31WTCCC01-11474H41WTCCC01-11474H51WTCCC01-11474H61WTCCC01-11476A11WTCCC01-11476A21WTCCC01-11476A31
numeric2,5900-0.6168 – 0.4182mean -0.003
Min.
-0.6168
1st Qu.
-0.076
Median
0.0026
Mean
-0.003
3rd Qu.
0.0756
Max.
0.4182
Std. dev
0.1163
Skewness
-0.3457
Kurtosis
0.873
Outliers
3628 low · 8 high
numeric2,5880-0.8534 – 0.5865mean 0.0002
Min.
-0.8534
1st Qu.
-0.1051
Median
0.0074
Mean
0.0002
3rd Qu.
0.116
Max.
0.5865
Std. dev
0.1716
Skewness
-0.3661
Kurtosis
0.6072
Outliers
3630 low · 6 high
numeric2,5890-0.8475 – 0.5566mean -0.0088
Min.
-0.8475
1st Qu.
-0.0982
Median
-0.0019
Mean
-0.0088
3rd Qu.
0.0903
Max.
0.5566
Std. dev
0.1531
Skewness
-0.3689
Kurtosis
0.9815
Outliers
5339 low · 14 high
numeric2,5900-0.6143 – 0.8979mean -0.0047
Min.
-0.6143
1st Qu.
-0.0968
Median
-0.0024
Mean
-0.0047
3rd Qu.
0.0825
Max.
0.8979
Std. dev
0.1407
Skewness
0.1112
Kurtosis
0.9402
Outliers
3210 low · 22 high
numeric2,5880-0.8861 – 0.721mean 0.0194
Min.
-0.8861
1st Qu.
-0.1047
Median
0.0092
Mean
0.0194
3rd Qu.
0.1483
Max.
0.721
Std. dev
0.1967
Skewness
0.0035
Kurtosis
0.3623
Outliers
3721 low · 16 high
numeric2,5890-1.0597 – 0.6836mean 0.0057
Min.
-1.0597
1st Qu.
-0.0871
Median
0.0068
Mean
0.0057
3rd Qu.
0.1078
Max.
0.6836
Std. dev
0.1704
Skewness
-0.9932
Kurtosis
4.774
Outliers
6347 low · 16 high
numeric2,5900-1.5459 – 0.8825mean -0.0014
Min.
-1.5459
1st Qu.
-0.1148
Median
0.0056
Mean
-0.0014
3rd Qu.
0.1218
Max.
0.8825
Std. dev
0.1944
Skewness
-0.3571
Kurtosis
2.217
Outliers
5639 low · 17 high
numeric2,5920-0.8039 – 0.7564mean -0.0027
Min.
-0.8039
1st Qu.
-0.1126
Median
0.0016
Mean
-0.0027
3rd Qu.
0.1153
Max.
0.7564
Std. dev
0.181
Skewness
-0.1837
Kurtosis
0.7247
Outliers
4931 low · 18 high
numeric2,5910-0.9602 – 0.5822mean -0.0175
Min.
-0.9602
1st Qu.
-0.1112
Median
-0.0107
Mean
-0.0175
3rd Qu.
0.0968
Max.
0.5822
Std. dev
0.1765
Skewness
-0.7025
Kurtosis
2.198
Outliers
7359 low · 14 high
numeric2,5930-0.8017 – 0.4993mean -0.0086
Min.
-0.8017
1st Qu.
-0.0997
Median
-0.0032
Mean
-0.0086
3rd Qu.
0.0865
Max.
0.4993
Std. dev
0.142
Skewness
-0.1798
Kurtosis
0.7389
Outliers
3521 low · 14 high
numeric2,5910-1.2191 – 0.4998mean -0.0164
Min.
-1.2191
1st Qu.
-0.1115
Median
0.0002
Mean
-0.0164
3rd Qu.
0.0995
Max.
0.4998
Std. dev
0.1766
Skewness
-0.7117
Kurtosis
1.536
Outliers
7064 low · 6 high
numeric2,5890-0.8161 – 0.5794mean -0.0057
Min.
-0.8161
1st Qu.
-0.0947
Median
-0.0008
Mean
-0.0057
3rd Qu.
0.0859
Max.
0.5794
Std. dev
0.1517
Skewness
-0.3956
Kurtosis
1.572
Outliers
6645 low · 21 high
numeric2,5910-0.8418 – 0.7245mean -0.03
Min.
-0.8418
1st Qu.
-0.167
Median
0.0023
Mean
-0.03
3rd Qu.
0.1479
Max.
0.7245
Std. dev
0.2592
Skewness
-0.4594
Kurtosis
-0.1659
Outliers
3128 low · 3 high
numeric2,5920-1.1436 – 0.5416mean -0.0063
Min.
-1.1436
1st Qu.
-0.1003
Median
0.001
Mean
-0.0063
3rd Qu.
0.0981
Max.
0.5416
Std. dev
0.1641
Skewness
-0.4505
Kurtosis
1.454
Outliers
7053 low · 17 high
numeric2,5920-0.9987 – 0.7065mean -0.0304
Min.
-0.9987
1st Qu.
-0.1353
Median
0.0015
Mean
-0.0304
3rd Qu.
0.2355
Max.
0.7065
Std. dev
0.3471
Skewness
-0.8911
Kurtosis
0.1378
Outliers
233233 low · 0 high
numeric2,5930-1.2517 – 0.9839mean -0.0345
Min.
-1.2517
1st Qu.
-0.2266
Median
-0.0015
Mean
-0.0345
3rd Qu.
0.232
Max.
0.9839
Std. dev
0.3813
Skewness
-0.5073
Kurtosis
-0.0607
Outliers
5351 low · 2 high
numeric2,5900-0.6068 – 0.774mean 0.0037
Min.
-0.6068
1st Qu.
-0.0839
Median
-0.0002
Mean
0.0037
3rd Qu.
0.088
Max.
0.774
Std. dev
0.1396
Skewness
0.3164
Kurtosis
1.595
Outliers
6122 low · 39 high
numeric2,5860-0.9305 – 1.0759mean -0.0068
Min.
-0.9305
1st Qu.
-0.1121
Median
-0.013
Mean
-0.0068
3rd Qu.
0.0931
Max.
1.0759
Std. dev
0.1653
Skewness
0.3609
Kurtosis
2.304
Outliers
5016 low · 34 high
numeric2,5900-0.928 – 0.7658mean -0.0004
Min.
-0.928
1st Qu.
-0.1084
Median
0.0051
Mean
-0.0004
3rd Qu.
0.1168
Max.
0.7658
Std. dev
0.1881
Skewness
-0.2996
Kurtosis
1.339
Outliers
7247 low · 25 high
numeric2,5930-1.0958 – 1.0437mean -0.0273
Min.
-1.0958
1st Qu.
-0.2408
Median
-0.0205
Mean
-0.0273
3rd Qu.
0.1966
Max.
1.0437
Std. dev
0.3374
Skewness
-0.0469
Kurtosis
-0.0151
Outliers
2112 low · 9 high
numeric2,5900-1.2398 – 0.7305mean -0.0433
Min.
-1.2398
1st Qu.
-0.1796
Median
-0.0061
Mean
-0.0433
3rd Qu.
0.1912
Max.
0.7305
Std. dev
0.3236
Skewness
-0.6915
Kurtosis
0.031
Outliers
8080 low · 0 high
numeric2,5920-1.2806 – 0.9009mean -0.0509
Min.
-1.2806
1st Qu.
-0.2029
Median
-0.0075
Mean
-0.0509
3rd Qu.
0.2117
Max.
0.9009
Std. dev
0.3621
Skewness
-0.7166
Kurtosis
0.0738
Outliers
9089 low · 1 high
numeric2,5900-0.5854 – 1.2479mean 0.0157
Min.
-0.5854
1st Qu.
-0.0974
Median
-0.0005
Mean
0.0157
3rd Qu.
0.1092
Max.
1.2479
Std. dev
0.1822
Skewness
1.099
Kurtosis
3.872
Outliers
7311 low · 62 high
numeric2,5930-0.9121 – 0.8231mean -0.0057
Min.
-0.9121
1st Qu.
-0.1517
Median
0
Mean
-0.0057
3rd Qu.
0.1463
Max.
0.8231
Std. dev
0.2429
Skewness
-0.1284
Kurtosis
0.3505
Outliers
4228 low · 14 high
numeric2,5860-1.0268 – 0.7782mean 0.0055
Min.
-1.0268
1st Qu.
-0.1492
Median
-0.0061
Mean
0.0055
3rd Qu.
0.1595
Max.
0.7782
Std. dev
0.2333
Skewness
0.041
Kurtosis
0.083
Outliers
2314 low · 9 high
numeric2,5930-0.8493 – 0.9206mean -0.0057
Min.
-0.8493
1st Qu.
-0.1652
Median
0.0061
Mean
-0.0057
3rd Qu.
0.1591
Max.
0.9206
Std. dev
0.237
Skewness
-0.1659
Kurtosis
0.0924
Outliers
2114 low · 7 high
numeric2,5880-0.5146 – 1.1836mean 0.0577
Min.
-0.5146
1st Qu.
-0.0949
Median
-0.0024
Mean
0.0577
3rd Qu.
0.1336
Max.
1.1836
Std. dev
0.2371
Skewness
1.262
Kurtosis
1.492
Outliers
2113 low · 208 high
numeric2,5900-0.6903 – 0.6278mean -0.0058
Min.
-0.6903
1st Qu.
-0.0787
Median
-0.0059
Mean
-0.0058
3rd Qu.
0.0695
Max.
0.6278
Std. dev
0.1209
Skewness
-0.0819
Kurtosis
1.259
Outliers
3818 low · 20 high
numeric2,5900-0.7047 – 0.5127mean -0.0107
Min.
-0.7047
1st Qu.
-0.1198
Median
-0.0063
Mean
-0.0107
3rd Qu.
0.1045
Max.
0.5127
Std. dev
0.1693
Skewness
-0.2511
Kurtosis
0.1562
Outliers
2420 low · 4 high
numeric2,5920-0.6599 – 0.6699mean 0.0263
Min.
-0.6599
1st Qu.
-0.1062
Median
-0.0062
Mean
0.0263
3rd Qu.
0.1351
Max.
0.6699
Std. dev
0.2002
Skewness
0.4632
Kurtosis
0.1017
Outliers
509 low · 41 high
numeric2,5920-0.6155 – 0.4055mean -0.0064
Min.
-0.6155
1st Qu.
-0.0873
Median
-0.0045
Mean
-0.0064
3rd Qu.
0.0739
Max.
0.4055
Std. dev
0.1197
Skewness
-0.1259
Kurtosis
0.3529
Outliers
2216 low · 6 high
numeric2,5930-0.5929 – 1.0881mean 0.0037
Min.
-0.5929
1st Qu.
-0.106
Median
-0.005
Mean
0.0037
3rd Qu.
0.1076
Max.
1.0881
Std. dev
0.1617
Skewness
0.4278
Kurtosis
1.588
Outliers
287 low · 21 high
numeric2,5930-0.6261 – 0.4264mean 0.0062
Min.
-0.6261
1st Qu.
-0.0586
Median
0.004
Mean
0.0062
3rd Qu.
0.0716
Max.
0.4264
Std. dev
0.1028
Skewness
-0.1576
Kurtosis
1.316
Outliers
4125 low · 16 high